Variant report

Variant	rs6920120
Chromosome Location	chr6:100664474-100664475
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:100657510..100660117-chr6:100663357..100665972,2	MCF-7	breast:
2	chr6:100663880..100666479-chr6:100667174..100669855,2	MCF-7	breast:

Extended variants
information (count: 47 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:44)

rs_ID	r²[population]
rs12333216	0.83[ASN][1000 genomes]
rs2073264	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs3934920	0.83[ASN][1000 genomes]
rs4131342	0.83[ASN][1000 genomes]
rs4131343	0.83[ASN][1000 genomes]
rs4140483	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4840123	0.83[ASN][1000 genomes]
rs4840124	0.81[ASN][1000 genomes]
rs55767814	0.81[ASN][1000 genomes]
rs56161817	0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs57860838	0.84[ASN][1000 genomes]
rs58379285	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs59163052	0.81[ASN][1000 genomes]
rs60804634	0.81[ASN][1000 genomes]
rs61068331	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs66584467	0.80[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs66847347	0.81[ASN][1000 genomes]
rs67008407	0.80[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs67084053	0.81[ASN][1000 genomes]
rs67330180	0.83[ASN][1000 genomes]
rs67396427	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs67533394	0.81[ASN][1000 genomes]
rs67868935	0.81[ASN][1000 genomes]
rs6915041	0.81[ASN][1000 genomes]
rs72946044	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs72948044	0.81[ASN][1000 genomes]
rs72948046	0.83[ASN][1000 genomes]
rs761708	0.80[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs761709	0.80[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9321981	0.81[ASN][1000 genomes]
rs9321985	0.83[ASN][1000 genomes]
rs9376797	0.83[AFR][1000 genomes]
rs9484798	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9484823	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9496736	0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9496859	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9496865	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9496882	0.83[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9496960	0.83[ASN][1000 genomes]
rs9496988	0.81[ASN][1000 genomes]
rs9497034	0.83[ASN][1000 genomes]
rs9497036	0.83[ASN][1000 genomes]
rs9497037	0.83[ASN][1000 genomes]
rs9497041	0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2752086	chr6:100257279-100675050	Weak transcription Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv604260	chr6:100480795-100664839	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv604262	chr6:100661336-100701917	Active TSS Enhancers Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:100658400-100665400	Weak transcription	Pancreatic Islets	Pancreatic Islet
2	chr6:100660400-100666200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
3	chr6:100660800-100664600	Weak transcription	Muscle Satellite Cultured Cells	--
4	chr6:100661200-100665200	Weak transcription	NHDF-Ad	bronchial

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