Variant report

Variant	rs56161817
Chromosome Location	chr6:100682792-100682793
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:100679763..100681397-chr6:100682604..100684636,2	MCF-7	breast:

Extended variants
information (count: 55 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:52)

rs_ID	r²[population]
rs10499029	0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12333216	0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1506087	0.87[EUR][1000 genomes]
rs1506088	0.87[EUR][1000 genomes]
rs2073264	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2841307	0.87[EUR][1000 genomes]
rs2939370	0.89[EUR][1000 genomes]
rs3934920	0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4131342	0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4131343	0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4140483	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4840123	0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4840124	0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs55767814	0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs55954654	0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs57860838	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs58379285	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs59163052	0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs60804634	0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs61068331	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs66584467	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs66847347	0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs67008407	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs67084053	0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs67330180	0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs67396427	0.84[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs67533394	0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs67868935	0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6915041	0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6920120	0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6933195	0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs72946044	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs72948044	0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs72948046	0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs761708	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs761709	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9321981	0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9321985	0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9484798	0.84[EUR][1000 genomes]
rs9484823	0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9496736	0.81[EUR][1000 genomes]
rs9496859	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9496865	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9496882	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9496960	0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9496988	0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9497034	0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9497036	0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9497037	0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9497041	0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9497049	0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9497096	0.87[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv604262	chr6:100661336-100701917	Active TSS Enhancers Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	esv1001991	chr6:100674651-100685935	Active TSS Enhancers Bivalent/Poised TSS Flanking Active TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	esv1795039	chr6:100674799-100691977	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:100677200-100683600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr6:100677400-100686800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr6:100679200-100685000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
4	chr6:100679400-100683400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
5	chr6:100679800-100684600	Enhancers	Fetal Intestine Large	intestine
6	chr6:100680800-100682800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
7	chr6:100682200-100682800	Enhancers	Adipose Nuclei	Adipose
8	chr6:100682200-100683000	Enhancers	Liver	Liver
9	chr6:100682400-100683200	Enhancers	HUES64 Cell Line	embryonic stem cell
10	chr6:100682400-100683800	Enhancers	A549	lung
11	chr6:100682400-100684000	Enhancers	iPS-18 Cell Line	embryonic stem cell
12	chr6:100682400-100686000	Enhancers	HUES48 Cell Line	embryonic stem cell
13	chr6:100682400-100686000	Enhancers	iPS-20b Cell Line	embryonic stem cell
14	chr6:100682600-100682800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
15	chr6:100682600-100683000	Enhancers	ES-I3 Cell Line	embryonic stem cell
16	chr6:100682600-100683000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
17	chr6:100682600-100683200	Enhancers	H1 Cell Line	embryonic stem cell
18	chr6:100682600-100684600	Enhancers	Fetal Intestine Small	intestine

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