Variant report

Variant	rs55954654
Chromosome Location	chr6:100725774-100725775
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:100725018..100726889-chr6:100738423..100740052,2	K562	blood:

Extended variants
information (count: 48 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:48)

rs_ID	r²[population]
rs10499029	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12333216	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1506087	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1506088	0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2073264	0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2841307	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2939370	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs3934920	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4131342	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4131343	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4140483	0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4840123	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4840124	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs55767814	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs56161817	0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs57860838	0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs58379285	0.95[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs59163052	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs60804634	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs61068331	0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs66584467	0.96[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs66847347	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs67008407	0.96[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs67084053	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs67330180	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs67533394	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs67868935	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6915041	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6933195	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs72946044	0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs72948044	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs72948046	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs761708	0.96[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs761709	0.96[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9321981	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9321985	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9484892	0.83[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9496859	0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9496865	0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9496882	0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9496960	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9496988	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9497034	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9497036	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9497037	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9497041	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9497049	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9497096	0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:100718800-100729200	Weak transcription	NHLF	lung
2	chr6:100722000-100731200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr6:100723000-100729400	Weak transcription	NHEK	skin
4	chr6:100723600-100729400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr6:100724600-100726000	Enhancers	ES-I3 Cell Line	embryonic stem cell
6	chr6:100725200-100729400	Weak transcription	NH-A	brain
7	chr6:100725400-100729000	Weak transcription	HUES64 Cell Line	embryonic stem cell
8	chr6:100725400-100729000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
9	chr6:100725600-100729200	Weak transcription	HUES6 Cell Line	embryonic stem cell
10	chr6:100725600-100729400	Weak transcription	HUVEC	blood vessel

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