Variant report

Variant	rs10499029
Chromosome Location	chr6:100744264-100744265
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:100737311..100740574-chr6:100740600..100744318,3	K562	blood:
2	chr6:100742755..100744691-chr6:100749750..100751577,2	MCF-7	breast:

Extended variants
information (count: 50 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:48)

rs_ID	r²[population]
rs12333216	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1506087	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1506088	0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2073264	0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2841307	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2939370	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3934920	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4131342	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4131343	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4140483	0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4840123	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4840124	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs55767814	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs55954654	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs56161817	0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs57860838	0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs58379285	0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs59163052	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs60804634	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs61068331	0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs66584467	0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs66847347	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs67008407	0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs67084053	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs67330180	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs67533394	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs67868935	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6915041	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6933195	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs72946044	0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs72948044	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs72948046	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs761708	0.93[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs761709	0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9321981	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9321985	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9484892	0.80[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9496859	0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9496865	0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9496882	0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9496960	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9496988	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9497034	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9497036	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9497037	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9497041	0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9497049	0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9497096	0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1030316	chr6:100733205-100759678	Enhancers Active TSS Weak transcription Flanking Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	n/a
2	nsv949535	chr6:100740293-101469052	Strong transcription Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:100739400-100749600	Weak transcription	HUES48 Cell Line	embryonic stem cell
2	chr6:100741000-100749600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
3	chr6:100741200-100744800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
4	chr6:100741400-100744600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
5	chr6:100742400-100744600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
6	chr6:100742600-100744800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
7	chr6:100743400-100744800	Enhancers	HUVEC	blood vessel
8	chr6:100743800-100744400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
9	chr6:100743800-100744800	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
10	chr6:100743800-100745400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
11	chr6:100743800-100745400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
12	chr6:100743800-100745600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
13	chr6:100743800-100746200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
14	chr6:100744200-100744400	Enhancers	Muscle Satellite Cultured Cells	--
15	chr6:100744200-100744400	Flanking Active TSS	Hela-S3	cervix
16	chr6:100744200-100744400	Enhancers	NHEK	skin
17	chr6:100744200-100744800	Flanking Active TSS	A549	lung
18	chr6:100744200-100745000	Enhancers	Fetal Intestine Small	intestine
19	chr6:100744200-100745000	Enhancers	HepG2	liver
20	chr6:100744200-100745200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
21	chr6:100744200-100745200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
22	chr6:100744200-100745400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
23	chr6:100744200-100745400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
24	chr6:100744200-100745400	Enhancers	NH-A	brain
25	chr6:100744200-100745400	Enhancers	NHDF-Ad	bronchial
26	chr6:100744200-100745400	Enhancers	NHLF	lung
27	chr6:100744200-100745600	Enhancers	HSMM	muscle
28	chr6:100744200-100745600	Enhancers	Osteobl	bone
29	chr6:100744200-100746200	Enhancers	HMEC	breast

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