Variant report

Variant	rs72946044
Chromosome Location	chr6:100679309-100679310
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:100678673..100681754-chr6:100683277..100685673,3	K562	blood:
2	chr6:100678985..100681308-chr6:100704669..100708291,4	K562	blood:
3	chr6:100677679..100679724-chr6:100693665..100695877,2	K562	blood:

Extended variants
information (count: 55 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:52)

rs_ID	r²[population]
rs10499029	0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12333216	0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1506087	0.86[EUR][1000 genomes]
rs1506088	0.86[EUR][1000 genomes]
rs2073264	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2841307	0.86[EUR][1000 genomes]
rs2939370	0.88[EUR][1000 genomes]
rs3934920	0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4131342	0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4131343	0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4140483	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4840123	0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4840124	0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs55767814	0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs55954654	0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs56161817	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs57860838	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs58379285	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs59163052	0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs60804634	0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs61068331	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs66584467	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs66847347	0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs67008407	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs67084053	0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs67330180	0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs67396427	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs67533394	0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs67868935	0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6915041	0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6920120	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6933195	0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs72948044	0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs72948046	0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs761708	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs761709	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9321981	0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9321985	0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9484798	0.85[EUR][1000 genomes]
rs9484823	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9496736	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9496859	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9496865	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9496882	0.86[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9496960	0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9496988	0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9497034	0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9497036	0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9497037	0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9497041	0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9497049	0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9497096	0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv604262	chr6:100661336-100701917	Active TSS Enhancers Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	esv1001991	chr6:100674651-100685935	Active TSS Enhancers Bivalent/Poised TSS Flanking Active TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	esv1795039	chr6:100674799-100691977	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:100677200-100683600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr6:100677400-100679400	Enhancers	Muscle Satellite Cultured Cells	--
3	chr6:100677400-100679400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
4	chr6:100677400-100679400	Enhancers	Fetal Intestine Large	intestine
5	chr6:100677400-100679600	Weak transcription	Aorta	Aorta
6	chr6:100677400-100679600	Enhancers	HUVEC	blood vessel
7	chr6:100677400-100680000	Weak transcription	Placenta Amnion	Placenta Amnion
8	chr6:100677400-100680200	Enhancers	Hela-S3	cervix
9	chr6:100677400-100682600	Weak transcription	H1 Cell Line	embryonic stem cell
10	chr6:100677400-100686800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
11	chr6:100677600-100681000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
12	chr6:100677800-100680400	Weak transcription	HUES48 Cell Line	embryonic stem cell
13	chr6:100678200-100679400	Weak transcription	Pancreatic Islets	Pancreatic Islet
14	chr6:100678200-100679600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
15	chr6:100678400-100679400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
16	chr6:100678400-100679600	Enhancers	Osteobl	bone
17	chr6:100678400-100679800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
18	chr6:100678400-100680600	Weak transcription	Liver	Liver
19	chr6:100678600-100679400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
20	chr6:100679000-100680000	Weak transcription	Fetal Intestine Small	intestine
21	chr6:100679000-100682600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
22	chr6:100679200-100680000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
23	chr6:100679200-100680200	Enhancers	NHDF-Ad	bronchial
24	chr6:100679200-100680600	Weak transcription	NHEK	skin
25	chr6:100679200-100682200	Weak transcription	Adipose Nuclei	Adipose
26	chr6:100679200-100682400	Weak transcription	A549	lung
27	chr6:100679200-100685000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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