Variant report

Variant	rs949527
Chromosome Location	chr9:116553211-116553212
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10429635	0.84[CEU][hapmap]
rs10817520	0.92[CEU][hapmap];0.93[TSI][hapmap];0.91[EUR][1000 genomes]
rs10981924	0.89[EUR][1000 genomes]
rs10981925	0.88[CEU][hapmap]
rs10981935	0.91[ASN][1000 genomes]
rs10981941	0.83[EUR][1000 genomes]
rs10981981	0.80[CEU][hapmap];0.82[TSI][hapmap]
rs12376085	0.86[EUR][1000 genomes]
rs12554801	0.82[EUR][1000 genomes]
rs59045685	0.96[EUR][1000 genomes]
rs7024705	0.83[JPT][hapmap]
rs7030996	0.96[EUR][1000 genomes]
rs7031010	0.91[EUR][1000 genomes]
rs7866201	0.83[JPT][hapmap]
rs913079	0.83[JPT][hapmap]
rs913080	1.00[CEU][hapmap];0.91[GIH][hapmap];0.82[MKK][hapmap];1.00[TSI][hapmap];0.97[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv430093	chr9:116330446-117325446	Weak transcription Enhancers Strong transcription Flanking Active TSS Bivalent/Poised TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	165 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs949527	ZNF618	cis	cerebellum	SCAN

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:116550000-116553800	Enhancers	Brain Germinal Matrix	brain
2	chr9:116551400-116556000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
3	chr9:116552000-116555800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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