Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:116552739..116554280-chr9:116561319..116563761,2	MCF-7	breast:

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs10429635	0.86[ASN][1000 genomes]
rs10817520	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10981921	0.82[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10981922	0.83[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10981924	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10981925	0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10981932	0.86[ASN][1000 genomes]
rs10981941	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10981978	0.84[ASN][1000 genomes]
rs10981981	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12376085	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12380621	0.84[ASN][1000 genomes]
rs12380863	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12554801	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12555454	0.90[ASN][1000 genomes]
rs1409382	0.86[ASN][1000 genomes]
rs4979283	0.80[EUR][1000 genomes]
rs59045685	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7030996	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7035099	0.98[ASN][1000 genomes]
rs913080	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs949527	0.91[EUR][1000 genomes]
rs987073	0.85[EUR][1000 genomes];0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv430093	chr9:116330446-117325446	Weak transcription Enhancers Strong transcription Flanking Active TSS Bivalent/Poised TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	165 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:116551400-116556000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
2	chr9:116552000-116555800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell

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