Variant report

Variant	rs12380621
Chromosome Location	chr9:116539749-116539750
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10429635	0.96[ASN][1000 genomes]
rs10817520	0.84[ASN][1000 genomes]
rs10981921	0.95[ASN][1000 genomes]
rs10981922	0.87[ASN][1000 genomes]
rs10981924	0.87[ASN][1000 genomes]
rs10981941	0.83[ASN][1000 genomes]
rs10981978	0.80[ASN][1000 genomes]
rs12376085	0.84[ASN][1000 genomes]
rs12380863	0.86[ASN][1000 genomes]
rs12554801	0.86[ASN][1000 genomes]
rs12555454	0.83[ASN][1000 genomes]
rs1359637	0.92[EUR][1000 genomes]
rs1409382	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7031010	0.84[ASN][1000 genomes]
rs7035099	0.85[ASN][1000 genomes]
rs987073	0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv430093	chr9:116330446-117325446	Weak transcription Enhancers Strong transcription Flanking Active TSS Bivalent/Poised TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	165 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:116539000-116551400	Weak transcription	Fetal Kidney	kidney

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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