Variant report

Variant	rs1409382
Chromosome Location	chr9:116538831-116538832
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10429635	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs10817520	0.89[CHB][hapmap];0.93[CHD][hapmap];0.91[JPT][hapmap];0.86[ASN][1000 genomes]
rs10981921	0.90[CHB][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs10981922	0.89[ASN][1000 genomes]
rs10981924	0.89[ASN][1000 genomes]
rs10981925	0.95[CHB][hapmap];0.97[CHD][hapmap];0.81[ASN][1000 genomes]
rs10981941	0.84[ASN][1000 genomes]
rs10981978	0.82[ASN][1000 genomes]
rs10981981	0.84[CHB][hapmap];0.91[JPT][hapmap];0.80[ASN][1000 genomes]
rs12376085	0.85[ASN][1000 genomes]
rs12380621	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12380863	0.88[ASN][1000 genomes]
rs12554801	0.87[ASN][1000 genomes]
rs12555454	0.84[ASN][1000 genomes]
rs1359637	0.95[EUR][1000 genomes]
rs7031010	0.86[ASN][1000 genomes]
rs7035099	0.86[ASN][1000 genomes]
rs987073	0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv430093	chr9:116330446-117325446	Weak transcription Enhancers Strong transcription Flanking Active TSS Bivalent/Poised TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	165 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs1409382	IL2RB	trans	lymphoblastoid	seeQTL
rs1409382	ZNF618	cis	cerebellum	SCAN

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:116538000-116539200	Enhancers	Fetal Stomach	stomach
2	chr9:116538800-116539000	Enhancers	Fetal Kidney	kidney
3	chr9:116538800-116539200	Enhancers	Spleen	Spleen

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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