Variant report
| Variant | rs10981921 |
|---|---|
| Chromosome Location | chr9:116537755-116537756 |
| allele | A/C |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:2)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:2 , 50 per page) page:
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| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000211556 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:19)
| rs_ID | r2[population] |
|---|---|
| rs10429635 | 0.90[CHB][hapmap];1.00[JPT][hapmap];0.84[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs10817520 | 0.91[JPT][hapmap];0.82[EUR][1000 genomes];0.86[ASN][1000 genomes] |
| rs10981922 | 0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.89[ASN][1000 genomes] |
| rs10981924 | 0.84[EUR][1000 genomes];0.89[ASN][1000 genomes] |
| rs10981925 | 0.85[CHB][hapmap];0.85[AMR][1000 genomes];0.97[EUR][1000 genomes];0.82[ASN][1000 genomes] |
| rs10981941 | 0.85[ASN][1000 genomes] |
| rs10981978 | 0.81[ASN][1000 genomes] |
| rs10981981 | 0.91[JPT][hapmap];0.81[ASN][1000 genomes] |
| rs12376085 | 0.86[ASN][1000 genomes] |
| rs12380621 | 0.95[ASN][1000 genomes] |
| rs12380863 | 0.89[ASN][1000 genomes] |
| rs12554801 | 0.88[ASN][1000 genomes] |
| rs12555454 | 0.85[ASN][1000 genomes] |
| rs1409382 | 0.99[ASN][1000 genomes] |
| rs4979283 | 0.95[EUR][1000 genomes] |
| rs7031010 | 0.82[EUR][1000 genomes];0.86[ASN][1000 genomes] |
| rs7035099 | 0.86[ASN][1000 genomes] |
| rs960957 | 0.92[EUR][1000 genomes] |
| rs987073 | 0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
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| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv430093 | chr9:116330446-117325446 | Weak transcription Enhancers Strong transcription Flanking Active TSS Bivalent/Poised TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNAmiRNA target site | 165 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr9:116535400-116538000 | Weak transcription | Fetal Stomach | stomach |
