Variant report

Variant	rs10429635
Chromosome Location	chr9:116537021-116537022
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10817520	0.84[CEU][hapmap];0.89[CHB][hapmap];0.91[JPT][hapmap];0.86[ASN][1000 genomes]
rs10981921	0.90[CHB][hapmap];1.00[JPT][hapmap];0.84[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10981922	0.83[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10981924	0.89[ASN][1000 genomes]
rs10981925	0.88[CEU][hapmap];0.95[CHB][hapmap];0.88[MEX][hapmap];0.93[TSI][hapmap];0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10981941	0.84[ASN][1000 genomes]
rs10981978	0.82[ASN][1000 genomes]
rs10981981	0.80[CEU][hapmap];0.84[CHB][hapmap];0.91[JPT][hapmap];0.80[ASN][1000 genomes]
rs12376085	0.85[ASN][1000 genomes]
rs12380621	0.96[ASN][1000 genomes]
rs12380863	0.88[ASN][1000 genomes]
rs12554801	0.87[ASN][1000 genomes]
rs12555454	0.84[ASN][1000 genomes]
rs1409382	1.00[ASN][1000 genomes]
rs7031010	0.86[ASN][1000 genomes]
rs7035099	0.86[ASN][1000 genomes]
rs913080	0.84[CEU][hapmap]
rs987073	0.81[EUR][1000 genomes];0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv430093	chr9:116330446-117325446	Weak transcription Enhancers Strong transcription Flanking Active TSS Bivalent/Poised TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	165 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:116535400-116538000	Weak transcription	Fetal Stomach	stomach
2	chr9:116536000-116537600	Weak transcription	Fetal Muscle Leg	muscle
3	chr9:116536400-116537200	Enhancers	Primary B cells from peripheral blood	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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