Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:116545594..116548048-chr9:116548545..116550561,2	MCF-7	breast:

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10429635	0.83[CEU][hapmap];0.95[CHB][hapmap];0.90[JPT][hapmap];0.88[ASN][1000 genomes]
rs10817520	0.91[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.86[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10981921	0.85[CHB][hapmap];0.90[JPT][hapmap];0.89[ASN][1000 genomes]
rs10981922	0.93[AFR][1000 genomes];0.99[ASN][1000 genomes]
rs10981924	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10981925	0.87[CEU][hapmap];1.00[CHB][hapmap];0.93[ASN][1000 genomes]
rs10981932	0.83[ASN][1000 genomes]
rs10981941	0.82[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10981978	0.85[ASN][1000 genomes]
rs10981981	0.89[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs12376085	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12380621	0.86[ASN][1000 genomes]
rs12554801	0.83[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12555454	0.89[ASN][1000 genomes]
rs1409382	0.88[ASN][1000 genomes]
rs59045685	0.81[EUR][1000 genomes]
rs7030996	0.81[EUR][1000 genomes]
rs7031010	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7035099	0.96[ASN][1000 genomes]
rs913080	0.87[CEU][hapmap];0.80[EUR][1000 genomes]
rs987073	0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv430093	chr9:116330446-117325446	Weak transcription Enhancers Strong transcription Flanking Active TSS Bivalent/Poised TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	165 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:116539000-116551400	Weak transcription	Fetal Kidney	kidney
2	chr9:116549800-116551800	Enhancers	iPS-20b Cell Line	embryonic stem cell
3	chr9:116550000-116550800	Bivalent Enhancer	Fetal Muscle Trunk	muscle
4	chr9:116550000-116551800	Enhancers	Breast Myoepithelial Primary Cells	Breast
5	chr9:116550000-116553800	Enhancers	Brain Germinal Matrix	brain
6	chr9:116550200-116550400	Bivalent Enhancer	Fetal Muscle Leg	muscle
7	chr9:116550200-116550600	Enhancers	HUES6 Cell Line	embryonic stem cell
8	chr9:116550200-116551000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell

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