Variant report

Variant	rs12555454
Chromosome Location	chr9:116584812-116584813
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10429635	0.84[ASN][1000 genomes]
rs10817520	0.90[ASN][1000 genomes]
rs10981921	0.85[ASN][1000 genomes]
rs10981922	0.88[ASN][1000 genomes]
rs10981924	0.88[ASN][1000 genomes]
rs10981925	0.82[ASN][1000 genomes]
rs10981941	0.85[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10981978	0.88[ASN][1000 genomes]
rs10981981	0.80[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12376085	0.81[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12380621	0.83[ASN][1000 genomes]
rs12380863	0.89[ASN][1000 genomes]
rs12554801	0.87[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1409382	0.84[ASN][1000 genomes]
rs7031010	0.90[ASN][1000 genomes]
rs7035099	0.91[ASN][1000 genomes]
rs987073	0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv430093	chr9:116330446-117325446	Weak transcription Enhancers Strong transcription Flanking Active TSS Bivalent/Poised TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	165 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:116584800-116585000	Enhancers	Aorta	Aorta

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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