Variant report

Variant	rs10981981
Chromosome Location	chr9:116627557-116627558
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10429635	0.80[CEU][hapmap];0.84[CHB][hapmap];0.91[JPT][hapmap];0.80[ASN][1000 genomes]
rs10817520	0.84[CEU][hapmap];0.84[CHB][hapmap];0.87[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.88[TSI][hapmap];0.91[AMR][1000 genomes];0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10981921	0.91[JPT][hapmap];0.81[ASN][1000 genomes]
rs10981922	0.84[ASN][1000 genomes]
rs10981924	0.89[AMR][1000 genomes];0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10981925	0.80[CEU][hapmap];0.89[CHB][hapmap];0.85[GIH][hapmap];0.81[JPT][hapmap]
rs10981941	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10981978	0.99[ASN][1000 genomes]
rs12376085	0.97[AMR][1000 genomes];0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12380863	0.85[ASN][1000 genomes]
rs12554801	0.98[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12555454	0.80[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1409382	0.80[ASN][1000 genomes]
rs59045685	0.81[EUR][1000 genomes]
rs7030996	0.81[EUR][1000 genomes]
rs7031010	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7035099	0.85[ASN][1000 genomes]
rs913080	0.80[CEU][hapmap];0.80[MEX][hapmap];0.82[TSI][hapmap];0.80[EUR][1000 genomes]
rs987073	0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv430093	chr9:116330446-117325446	Weak transcription Enhancers Strong transcription Flanking Active TSS Bivalent/Poised TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	165 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs10981981	FKBP15	cis	cerebellum	SCAN
rs10981981	EPB41L4B	cis	cerebellum	SCAN

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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