Variant report

Variant	rs9498150
Chromosome Location	chr6:149085256-149085257
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs13195218	1.00[CEU][hapmap]
rs9485327	0.81[EUR][1000 genomes]
rs9485328	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9498148	0.81[EUR][1000 genomes]
rs9498149	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9498151	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9498152	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9498154	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9498155	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9498156	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9689803	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

No data

Chromatin state (count:64 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:149070000-149087400	Weak transcription	Gastric	stomach
2	chr6:149082400-149097400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr6:149082600-149085400	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
4	chr6:149082600-149091200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
5	chr6:149083000-149086000	Weak transcription	Placenta	Placenta
6	chr6:149083000-149087200	Weak transcription	Brain Inferior Temporal Lobe	brain
7	chr6:149083000-149087400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
8	chr6:149083000-149087400	Weak transcription	Lung	lung
9	chr6:149083000-149087400	Weak transcription	Pancreas	Pancrea
10	chr6:149083000-149090000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr6:149083000-149090000	Weak transcription	Fetal Muscle Trunk	muscle
12	chr6:149083000-149090000	Weak transcription	Left Ventricle	heart
13	chr6:149083000-149093000	Weak transcription	Right Atrium	heart
14	chr6:149083000-149097400	Weak transcription	Brain Substantia Nigra	brain
15	chr6:149083200-149087200	Weak transcription	Brain Angular Gyrus	brain
16	chr6:149083200-149087400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
17	chr6:149083200-149088200	Enhancers	Primary B cells from peripheral blood	blood
18	chr6:149083200-149090000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
19	chr6:149083200-149097400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
20	chr6:149083400-149087000	Weak transcription	Thymus	Thymus
21	chr6:149083400-149088200	Enhancers	Primary B cells from cord blood	blood
22	chr6:149083400-149090000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
23	chr6:149083600-149086400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
24	chr6:149083600-149087200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
25	chr6:149083600-149087400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
26	chr6:149083600-149087400	Weak transcription	Primary T cells fromperipheralblood	blood
27	chr6:149083600-149087400	Weak transcription	Muscle Satellite Cultured Cells	--
28	chr6:149083600-149087400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
29	chr6:149083600-149087400	Weak transcription	Spleen	Spleen
30	chr6:149083600-149090200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
31	chr6:149083600-149090800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
32	chr6:149083600-149091400	Weak transcription	HSMMtube	muscle
33	chr6:149083600-149091800	Weak transcription	Brain Anterior Caudate	brain
34	chr6:149083600-149093400	Weak transcription	Esophagus	oesophagus
35	chr6:149083600-149098000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
36	chr6:149083800-149087000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
37	chr6:149083800-149087000	Weak transcription	Fetal Thymus	thymus
38	chr6:149083800-149087200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
39	chr6:149083800-149087200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
40	chr6:149083800-149087600	Weak transcription	Stomach Smooth Muscle	stomach
41	chr6:149083800-149089800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
42	chr6:149083800-149091400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
43	chr6:149083800-149091600	Weak transcription	Primary T cells from cord blood	blood
44	chr6:149084000-149085400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
45	chr6:149084000-149085400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
46	chr6:149084000-149085600	Weak transcription	H9 Cell Line	embryonic stem cell
47	chr6:149084000-149086000	Weak transcription	H1 Cell Line	embryonic stem cell
48	chr6:149084000-149086200	Weak transcription	HUES6 Cell Line	embryonic stem cell
49	chr6:149084000-149087000	Weak transcription	Fetal Heart	heart
50	chr6:149084000-149087200	Weak transcription	Fetal Kidney	kidney

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