Variant report

Variant	rs9689803
Chromosome Location	chr6:149086736-149086737
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:149086530..149088907-chr6:149122938..149124830,2	MCF-7	breast:

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs9485327	0.81[EUR][1000 genomes]
rs9485328	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9498148	0.81[EUR][1000 genomes]
rs9498149	1.00[EUR][1000 genomes]
rs9498150	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9498151	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9498152	1.00[EUR][1000 genomes]
rs9498154	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9498155	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9498156	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]

No data

Chromatin state (count:62 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:149070000-149087400	Weak transcription	Gastric	stomach
2	chr6:149082400-149097400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr6:149082600-149091200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
4	chr6:149083000-149087200	Weak transcription	Brain Inferior Temporal Lobe	brain
5	chr6:149083000-149087400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
6	chr6:149083000-149087400	Weak transcription	Lung	lung
7	chr6:149083000-149087400	Weak transcription	Pancreas	Pancrea
8	chr6:149083000-149090000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr6:149083000-149090000	Weak transcription	Fetal Muscle Trunk	muscle
10	chr6:149083000-149090000	Weak transcription	Left Ventricle	heart
11	chr6:149083000-149093000	Weak transcription	Right Atrium	heart
12	chr6:149083000-149097400	Weak transcription	Brain Substantia Nigra	brain
13	chr6:149083200-149087200	Weak transcription	Brain Angular Gyrus	brain
14	chr6:149083200-149087400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
15	chr6:149083200-149088200	Enhancers	Primary B cells from peripheral blood	blood
16	chr6:149083200-149090000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
17	chr6:149083200-149097400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
18	chr6:149083400-149087000	Weak transcription	Thymus	Thymus
19	chr6:149083400-149088200	Enhancers	Primary B cells from cord blood	blood
20	chr6:149083400-149090000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
21	chr6:149083600-149087200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
22	chr6:149083600-149087400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
23	chr6:149083600-149087400	Weak transcription	Primary T cells fromperipheralblood	blood
24	chr6:149083600-149087400	Weak transcription	Muscle Satellite Cultured Cells	--
25	chr6:149083600-149087400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
26	chr6:149083600-149087400	Weak transcription	Spleen	Spleen
27	chr6:149083600-149090200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
28	chr6:149083600-149090800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
29	chr6:149083600-149091400	Weak transcription	HSMMtube	muscle
30	chr6:149083600-149091800	Weak transcription	Brain Anterior Caudate	brain
31	chr6:149083600-149093400	Weak transcription	Esophagus	oesophagus
32	chr6:149083600-149098000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
33	chr6:149083800-149087000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
34	chr6:149083800-149087000	Weak transcription	Fetal Thymus	thymus
35	chr6:149083800-149087200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
36	chr6:149083800-149087200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
37	chr6:149083800-149087600	Weak transcription	Stomach Smooth Muscle	stomach
38	chr6:149083800-149089800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
39	chr6:149083800-149091400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
40	chr6:149083800-149091600	Weak transcription	Primary T cells from cord blood	blood
41	chr6:149084000-149087000	Weak transcription	Fetal Heart	heart
42	chr6:149084000-149087200	Weak transcription	Fetal Kidney	kidney
43	chr6:149084000-149087200	Weak transcription	Fetal Lung	lung
44	chr6:149084000-149087200	Weak transcription	Rectal Smooth Muscle	rectum
45	chr6:149084000-149097600	Weak transcription	Fetal Stomach	stomach
46	chr6:149084200-149087400	Weak transcription	Stomach Mucosa	stomach
47	chr6:149084200-149091200	Weak transcription	Primary T helper cells PMA-I stimulated	--
48	chr6:149084200-149097000	Weak transcription	Colon Smooth Muscle	Colon
49	chr6:149084200-149097400	Weak transcription	Ovary	ovary
50	chr6:149084400-149089800	Weak transcription	Fetal Brain Male	brain

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