Variant report

Variant	rs9498152
Chromosome Location	chr6:149094406-149094407
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:149091760..149095285-chr6:149096702..149102214,4	MCF-7	breast:

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs9485327	0.81[EUR][1000 genomes]
rs9485328	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9498148	0.81[EUR][1000 genomes]
rs9498149	1.00[EUR][1000 genomes]
rs9498150	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9498151	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9498154	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9498155	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9498156	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs9689803	1.00[EUR][1000 genomes]

No data

Chromatin state (count:54 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:149082400-149097400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr6:149083000-149097400	Weak transcription	Brain Substantia Nigra	brain
3	chr6:149083200-149097400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
4	chr6:149083600-149098000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr6:149084000-149097600	Weak transcription	Fetal Stomach	stomach
6	chr6:149084200-149097000	Weak transcription	Colon Smooth Muscle	Colon
7	chr6:149084200-149097400	Weak transcription	Ovary	ovary
8	chr6:149087600-149111600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
9	chr6:149087800-149096200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
10	chr6:149087800-149097400	Weak transcription	Fetal Lung	lung
11	chr6:149087800-149097400	Weak transcription	Rectal Smooth Muscle	rectum
12	chr6:149087800-149106000	Weak transcription	Gastric	stomach
13	chr6:149090200-149099600	Weak transcription	Right Ventricle	heart
14	chr6:149090400-149097000	Weak transcription	Fetal Muscle Trunk	muscle
15	chr6:149090400-149098000	Weak transcription	Spleen	Spleen
16	chr6:149090600-149097400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
17	chr6:149091600-149097200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
18	chr6:149091800-149094800	Weak transcription	H9 Cell Line	embryonic stem cell
19	chr6:149091800-149097400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
20	chr6:149091800-149097400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
21	chr6:149091800-149097800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
22	chr6:149092000-149094800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
23	chr6:149092000-149094800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
24	chr6:149092000-149097400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
25	chr6:149092000-149097400	Weak transcription	Monocytes-CD14+_RO01746	blood
26	chr6:149092000-149097600	Weak transcription	HUES64 Cell Line	embryonic stem cell
27	chr6:149092000-149097800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
28	chr6:149092000-149098000	Weak transcription	Brain Anterior Caudate	brain
29	chr6:149092200-149096000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
30	chr6:149092600-149094800	Weak transcription	HUES48 Cell Line	embryonic stem cell
31	chr6:149092600-149094800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
32	chr6:149092600-149097200	Weak transcription	Cortex derived primary cultured neurospheres	brain
33	chr6:149092600-149097200	Weak transcription	HSMMtube	muscle
34	chr6:149092600-149097400	Weak transcription	HUES6 Cell Line	embryonic stem cell
35	chr6:149092600-149098000	Weak transcription	Pancreas	Pancrea
36	chr6:149092600-149099600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
37	chr6:149093200-149097600	Weak transcription	Fetal Heart	heart
38	chr6:149093200-149102600	Weak transcription	Sigmoid Colon	Sigmoid Colon
39	chr6:149093400-149096000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
40	chr6:149093400-149097200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
41	chr6:149093600-149096200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
42	chr6:149093600-149097400	Weak transcription	Right Atrium	heart
43	chr6:149093600-149097600	Weak transcription	Stomach Mucosa	stomach
44	chr6:149093600-149102200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
45	chr6:149094000-149095000	Enhancers	Dnd41	blood
46	chr6:149094000-149096200	Weak transcription	Primary B cells from peripheral blood	blood
47	chr6:149094000-149096200	Weak transcription	Primary hematopoietic stem cells	blood
48	chr6:149094000-149096600	Weak transcription	Primary B cells from cord blood	blood
49	chr6:149094000-149097200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
50	chr6:149094000-149097400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood

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