Variant report

Variant	rs9498154
Chromosome Location	chr6:149098668-149098669
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:149091760..149095285-chr6:149096702..149102214,4	MCF-7	breast:

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs13195218	1.00[CEU][hapmap]
rs9485327	0.81[EUR][1000 genomes]
rs9485328	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9498148	0.81[EUR][1000 genomes]
rs9498149	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9498150	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9498151	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9498152	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9498155	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9498156	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9689803	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]

No data

Chromatin state (count:59 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:149087600-149111600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
2	chr6:149087800-149106000	Weak transcription	Gastric	stomach
3	chr6:149090200-149099600	Weak transcription	Right Ventricle	heart
4	chr6:149092600-149099600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr6:149093200-149102600	Weak transcription	Sigmoid Colon	Sigmoid Colon
6	chr6:149093600-149102200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
7	chr6:149094000-149102400	Weak transcription	Primary T cells fromperipheralblood	blood
8	chr6:149095200-149099600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr6:149095400-149111600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
10	chr6:149097000-149114400	Weak transcription	Primary B cells from cord blood	blood
11	chr6:149097400-149098800	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
12	chr6:149097400-149098800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
13	chr6:149097600-149098800	Enhancers	Fetal Heart	heart
14	chr6:149097800-149102000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
15	chr6:149098000-149102000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
16	chr6:149098200-149099200	Enhancers	Rectal Smooth Muscle	rectum
17	chr6:149098200-149099400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
18	chr6:149098200-149099600	Weak transcription	Fetal Muscle Trunk	muscle
19	chr6:149098200-149099600	Weak transcription	Lung	lung
20	chr6:149098200-149099600	Weak transcription	Monocytes-CD14+_RO01746	blood
21	chr6:149098200-149099800	Weak transcription	Placenta	Placenta
22	chr6:149098200-149100000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
23	chr6:149098200-149100600	Weak transcription	Right Atrium	heart
24	chr6:149098200-149102200	Weak transcription	Primary B cells from peripheral blood	blood
25	chr6:149098200-149102200	Weak transcription	HSMMtube	muscle
26	chr6:149098200-149104600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
27	chr6:149098200-149107000	Weak transcription	HUES6 Cell Line	embryonic stem cell
28	chr6:149098400-149098800	Enhancers	Colon Smooth Muscle	Colon
29	chr6:149098400-149098800	Weak transcription	HMEC	breast
30	chr6:149098400-149099000	Weak transcription	Brain Anterior Caudate	brain
31	chr6:149098400-149099400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
32	chr6:149098400-149099600	Weak transcription	H1 Cell Line	embryonic stem cell
33	chr6:149098400-149099600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
34	chr6:149098400-149099600	Weak transcription	HUES48 Cell Line	embryonic stem cell
35	chr6:149098400-149099600	Weak transcription	Primary monocytes fromperipheralblood	blood
36	chr6:149098400-149099600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
37	chr6:149098400-149099600	Weak transcription	Brain Substantia Nigra	brain
38	chr6:149098400-149099600	Weak transcription	Left Ventricle	heart
39	chr6:149098400-149099600	Weak transcription	Ovary	ovary
40	chr6:149098400-149099600	Weak transcription	Pancreas	Pancrea
41	chr6:149098400-149099600	Weak transcription	Spleen	Spleen
42	chr6:149098400-149099800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
43	chr6:149098400-149099800	Weak transcription	Esophagus	oesophagus
44	chr6:149098400-149099800	Weak transcription	Fetal Lung	lung
45	chr6:149098400-149100400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
46	chr6:149098400-149102000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
47	chr6:149098400-149102200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
48	chr6:149098400-149102400	Weak transcription	Aorta	Aorta
49	chr6:149098400-149103000	Weak transcription	Fetal Stomach	stomach
50	chr6:149098400-149104800	Weak transcription	HUES64 Cell Line	embryonic stem cell

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