Variant report

Variant	rs9665499
Chromosome Location	chr10:21915291-21915292
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr10:21915263-21915446	H1-hESC	embryonic stem cell:	n/a	n/a
2	POLR2A	chr10:21915187-21915423	K562	blood:	n/a	n/a
3	POLR2A	chr10:21914692-21917141	K562	blood:	n/a	n/a
4	POLR2A	chr10:21915066-21915391	K562	blood:	n/a	n/a
5	POLR2A	chr10:21915028-21916515	HepG2	liver:	n/a	n/a

Variant related genes	Relation type
HNRNPRP1	TF binding region

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs11012810	1.00[ASN][1000 genomes]
rs11498370	1.00[ASN][1000 genomes]
rs11817861	0.83[AFR][1000 genomes]
rs56789943	0.83[AFR][1000 genomes]
rs57375786	0.83[AFR][1000 genomes]
rs57427469	0.83[AFR][1000 genomes]
rs57962540	0.80[AFR][1000 genomes]
rs60058036	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61527072	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6482185	0.83[AFR][1000 genomes]
rs6482186	0.81[AFR][1000 genomes]
rs7070997	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7075425	0.83[AFR][1000 genomes]
rs7078496	0.85[AFR][1000 genomes]
rs7083501	0.81[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs7087761	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7091704	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7097664	1.00[ASN][1000 genomes]
rs7100553	0.83[AFR][1000 genomes]
rs7893818	0.90[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs7901657	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7902427	0.83[AFR][1000 genomes]
rs7912009	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7919823	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1036585	chr10:21833717-21998042	Weak transcription Strong transcription Enhancers ZNF genes & repeats Genic enhancers Active TSS Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
2	nsv550202	chr10:21856475-22027644	Strong transcription Weak transcription Enhancers Genic enhancers Flanking Active TSS ZNF genes & repeats Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
3	nsv1052464	chr10:21856531-22220087	Weak transcription Strong transcription ZNF genes & repeats Enhancers Genic enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
4	esv1802317	chr10:21866085-22288132	Strong transcription Enhancers Weak transcription ZNF genes & repeats Genic enhancers Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
5	nsv894947	chr10:21869609-22117913	ZNF genes & repeats Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
6	esv1792771	chr10:21874152-22013644	Enhancers ZNF genes & repeats Weak transcription Strong transcription Genic enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
7	esv1803077	chr10:21878144-22013644	Weak transcription Enhancers Genic enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:121 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:21824600-21930400	Weak transcription	Gastric	stomach
2	chr10:21862400-21916400	Weak transcription	Brain Inferior Temporal Lobe	brain
3	chr10:21874000-21938400	Weak transcription	Spleen	Spleen
4	chr10:21874600-21923400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
5	chr10:21877400-21926600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
6	chr10:21892400-21926400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
7	chr10:21893600-21926000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
8	chr10:21896600-21926000	Weak transcription	H9 Cell Line	embryonic stem cell
9	chr10:21896800-21973200	Weak transcription	Hela-S3	cervix
10	chr10:21897200-21928000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
11	chr10:21897400-21925000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
12	chr10:21897400-21925200	Weak transcription	H1 Cell Line	embryonic stem cell
13	chr10:21897400-21960200	Weak transcription	Fetal Brain Male	brain
14	chr10:21898200-21941200	Weak transcription	Fetal Kidney	kidney
15	chr10:21898600-21943800	Weak transcription	Brain Cingulate Gyrus	brain
16	chr10:21899000-21915400	Weak transcription	Brain Substantia Nigra	brain
17	chr10:21899000-21923800	Weak transcription	Small Intestine	intestine
18	chr10:21899400-21938000	Weak transcription	Aorta	Aorta
19	chr10:21901000-21923200	Weak transcription	Skeletal Muscle Female	skeletal muscle
20	chr10:21901000-21933600	Weak transcription	Right Ventricle	heart
21	chr10:21903000-21919200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
22	chr10:21903400-21915400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
23	chr10:21903600-21924800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
24	chr10:21903800-21925600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
25	chr10:21904600-21928400	Weak transcription	Brain Germinal Matrix	brain
26	chr10:21904600-21929200	Weak transcription	Fetal Brain Female	brain
27	chr10:21905400-21932200	Weak transcription	Colon Smooth Muscle	Colon
28	chr10:21906600-21940600	Weak transcription	NH-A	brain
29	chr10:21907000-21916600	Weak transcription	Muscle Satellite Cultured Cells	--
30	chr10:21908400-21964000	Weak transcription	Colonic Mucosa	Colon
31	chr10:21909400-21938200	Weak transcription	NHDF-Ad	bronchial
32	chr10:21909800-21924000	Weak transcription	GM12878-XiMat	blood
33	chr10:21910600-21927800	Weak transcription	Placenta Amnion	Placenta Amnion
34	chr10:21910800-21916000	Weak transcription	Skeletal Muscle Male	skeletal muscle
35	chr10:21911000-21917200	Strong transcription	Dnd41	blood
36	chr10:21911000-21920600	Strong transcription	Primary B cells from cord blood	blood
37	chr10:21911000-21921000	Strong transcription	Monocytes-CD14+_RO01746	blood
38	chr10:21911200-21915600	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
39	chr10:21911200-21916000	Strong transcription	Primary B cells from peripheral blood	blood
40	chr10:21911200-21921000	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
41	chr10:21911200-21921800	Strong transcription	Primary monocytes fromperipheralblood	blood
42	chr10:21911600-21915600	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
43	chr10:21911600-21921800	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
44	chr10:21911800-21921000	Strong transcription	A549	lung
45	chr10:21912200-21923600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
46	chr10:21913000-21915400	Enhancers	Primary neutrophils fromperipheralblood	blood
47	chr10:21913200-21947000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
48	chr10:21913400-21915400	Strong transcription	HUES6 Cell Line	embryonic stem cell
49	chr10:21913400-21915600	Strong transcription	Fetal Intestine Large	intestine
50	chr10:21913600-21915400	Strong transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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