Variant report

Variant	rs7902427
Chromosome Location	chr10:21835615-21835616
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:21835381..21838348-chr10:21840703..21843371,2	MCF-7	breast:
2	chr10:21822223..21825160-chr10:21831849..21835887,4	MCF-7	breast:
3	chr10:21813899..21815727-chr10:21833669..21836225,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000078403	Chromatin interaction
ENSG00000180592	Chromatin interaction

Extended variants
information (count: 46 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs11815111	1.00[ASN][1000 genomes]
rs11817861	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12354471	1.00[ASN][1000 genomes]
rs56789943	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs57115266	1.00[ASN][1000 genomes]
rs57375786	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs57427469	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs57962540	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs60058036	0.96[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs61527072	0.86[AFR][1000 genomes]
rs6482185	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs6482186	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7070997	0.83[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs7071519	1.00[ASN][1000 genomes]
rs7072980	1.00[ASN][1000 genomes]
rs7073709	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7075425	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7077377	1.00[ASN][1000 genomes]
rs7079672	1.00[ASN][1000 genomes]
rs7087761	0.96[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs7089548	1.00[ASN][1000 genomes]
rs7091704	0.81[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs7095009	1.00[ASN][1000 genomes]
rs7100471	1.00[ASN][1000 genomes]
rs7100553	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7101344	1.00[ASN][1000 genomes]
rs7895753	1.00[ASN][1000 genomes]
rs7896281	1.00[ASN][1000 genomes]
rs7899191	1.00[ASN][1000 genomes]
rs7901037	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7901657	0.86[AFR][1000 genomes]
rs7903144	1.00[ASN][1000 genomes]
rs7909529	1.00[ASN][1000 genomes]
rs7909582	1.00[ASN][1000 genomes]
rs7911723	1.00[ASN][1000 genomes]
rs7912009	0.81[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs9663287	1.00[ASN][1000 genomes]
rs9665499	0.83[AFR][1000 genomes]
rs9665526	1.00[ASN][1000 genomes]
rs9665607	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv825284	chr10:21739527-21847437	Active TSS Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Enhancers Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	34 gene(s)	inside rSNPs	diseases
2	nsv825285	chr10:21742026-21874334	Strong transcription Weak transcription Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	34 gene(s)	inside rSNPs	diseases
3	nsv825286	chr10:21757784-21838890	Flanking Active TSS Bivalent/Poised TSS Weak transcription Active TSS Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	34 gene(s)	inside rSNPs	diseases
4	nsv825289	chr10:21762506-21845875	Strong transcription Enhancers Active TSS Bivalent/Poised TSS Flanking Active TSS Weak transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	34 gene(s)	inside rSNPs	diseases
5	nsv1052477	chr10:21810270-21889726	Active TSS Genic enhancers Enhancers Weak transcription Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases
6	nsv1036585	chr10:21833717-21998042	Weak transcription Strong transcription Enhancers ZNF genes & repeats Genic enhancers Active TSS Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:21822800-21837800	Weak transcription	Stomach Mucosa	stomach
2	chr10:21824600-21842600	Strong transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr10:21824600-21864600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
4	chr10:21824600-21930400	Weak transcription	Gastric	stomach
5	chr10:21824800-21839200	Weak transcription	Hela-S3	cervix
6	chr10:21824800-21841800	Weak transcription	Pancreatic Islets	Pancreatic Islet
7	chr10:21824800-21852200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr10:21824800-21852200	Strong transcription	Fetal Intestine Small	intestine
9	chr10:21824800-21860200	Weak transcription	Psoas Muscle	Psoas
10	chr10:21825000-21838800	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
11	chr10:21825000-21844200	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
12	chr10:21825000-21850000	Strong transcription	HUES64 Cell Line	embryonic stem cell
13	chr10:21825200-21835800	Strong transcription	Placenta	Placenta
14	chr10:21825200-21850600	Strong transcription	Fetal Stomach	stomach
15	chr10:21825200-21854800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
16	chr10:21825400-21836000	Strong transcription	HUES6 Cell Line	embryonic stem cell
17	chr10:21825400-21836200	Strong transcription	Fetal Muscle Trunk	muscle
18	chr10:21825400-21836800	Strong transcription	Fetal Muscle Leg	muscle
19	chr10:21825400-21837000	Strong transcription	Fetal Thymus	thymus
20	chr10:21825400-21839000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
21	chr10:21825400-21839200	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
22	chr10:21825600-21836200	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
23	chr10:21825600-21836400	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
24	chr10:21825600-21836400	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
25	chr10:21825600-21842200	Strong transcription	Cortex derived primary cultured neurospheres	brain
26	chr10:21825600-21849800	Strong transcription	Primary monocytes fromperipheralblood	blood
27	chr10:21825600-21850000	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
28	chr10:21825600-21857800	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
29	chr10:21825800-21844400	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
30	chr10:21825800-21856200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
31	chr10:21826000-21836000	Strong transcription	Primary B cells from peripheral blood	blood
32	chr10:21826000-21836200	Strong transcription	iPS-20b Cell Line	embryonic stem cell
33	chr10:21826000-21836400	Strong transcription	GM12878-XiMat	blood
34	chr10:21826000-21838800	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
35	chr10:21826200-21836200	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
36	chr10:21826200-21844200	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
37	chr10:21826200-21850600	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
38	chr10:21826400-21836800	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
39	chr10:21826800-21835800	Strong transcription	H1 Cell Line	embryonic stem cell
40	chr10:21826800-21839400	Strong transcription	Liver	Liver
41	chr10:21826800-21844800	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
42	chr10:21827000-21836600	Strong transcription	Fetal Intestine Large	intestine
43	chr10:21827200-21842600	Strong transcription	Primary T cells fromperipheralblood	blood
44	chr10:21827800-21836000	Strong transcription	Sigmoid Colon	Sigmoid Colon
45	chr10:21827800-21836800	Strong transcription	Adipose Nuclei	Adipose
46	chr10:21827800-21839400	Strong transcription	Fetal Lung	lung
47	chr10:21827800-21842200	Strong transcription	Osteobl	bone
48	chr10:21827800-21850800	Strong transcription	Breast Myoepithelial Primary Cells	Breast
49	chr10:21828000-21839000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
50	chr10:21828000-21851200	Strong transcription	Primary hematopoietic stem cells short term culture	blood

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