Variant report

Variant	rs11815111
Chromosome Location	chr10:21813958-21813959
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	SPI1	chr10:21813522-21813995	GM12891	blood:	n/a	chr10:21813766-21813775 chr10:21813764-21813777
2	ZNF263	chr10:21813579-21816548	HEK293-T-REx	kidney:	n/a	chr10:21814552-21814561 chr10:21814647-21814668 chr10:21814568-21814577 chr10:21816072-21816081
3	SIN3AK20	chr10:21813953-21814966	A549	lung:	n/a	n/a
4	CHD1	chr10:21812350-21818489	H1-hESC	embryonic stem cell:	n/a	chr10:21815540-21815550 chr10:21814991-21815001
5	MYC	chr10:21812479-21817071	K562	blood:	n/a	chr10:21816323-21816333 chr10:21815247-21815257 chr10:21816880-21816888 chr10:21814827-21814836 chr10:21813519-21813529
6	MAFK	chr10:21813844-21814153	IMR90	lung:	n/a	chr10:21813957-21813968
7	MTA3	chr10:21813923-21814891	GM12878	blood:	n/a	n/a
8	TBP	chr10:21813474-21817455	K562	blood:	n/a	n/a
9	HEY1	chr10:21813443-21814997	K562	blood:	n/a	chr10:21813521-21813536
10	POLR2A	chr10:21813436-21815816	K562	blood:	n/a	n/a
11	TAF1	chr10:21813781-21814123	K562	blood:	n/a	n/a
12	GTF2B	chr10:21813583-21814940	K562	blood:	n/a	n/a
13	MYC	chr10:21813382-21815003	H1-hESC	embryonic stem cell:	n/a	chr10:21814827-21814836 chr10:21813519-21813529
14	POLR2A	chr10:21813512-21815029	H1-hESC	embryonic stem cell:	n/a	n/a
15	POLR2A	chr10:21813909-21814084	H1-hESC	embryonic stem cell:	n/a	n/a
16	POLR2A	chr10:21813543-21817588	K562	blood:	n/a	n/a
17	TEAD4	chr10:21813853-21815140	K562	blood:	n/a	n/a
18	CEBPB	chr10:21813774-21814877	IMR90	lung:	n/a	n/a
19	HDAC2	chr10:21813467-21815021	HepG2	liver:	n/a	n/a
20	POLR2A	chr10:21813587-21816614	MCF-7	breast:	n/a	n/a
21	TAF1	chr10:21813800-21814120	SK-N-SH	brain:	n/a	n/a
22	CEBPD	chr10:21813853-21814140	HepG2	liver:	n/a	n/a
23	TCF7L2	chr10:21813718-21814966	HEK293	kidney:	n/a	chr10:21813750-21813760 chr10:21813748-21813764 chr10:21813748-21813764 chr10:21813752-21813761 chr10:21813749-21813763
24	MAZ	chr10:21813911-21816506	GM12878	blood:	n/a	chr10:21816323-21816333 chr10:21815247-21815257 chr10:21814827-21814836
25	MAFK	chr10:21813730-21814737	HepG2	liver:	n/a	chr10:21813957-21813968
26	TAF7	chr10:21813643-21816681	H1-hESC	embryonic stem cell:	n/a	n/a
27	MXI1	chr10:21813563-21817192	IMR90	lung:	n/a	n/a
28	HEY1	chr10:21813480-21816635	HepG2	liver:	n/a	chr10:21813521-21813536 chr10:21815495-21815510
29	POLR2A	chr10:21813418-21816657	NB4	blood:	n/a	n/a
30	BHLHE40	chr10:21813156-21816925	K562	blood:	n/a	chr10:21814887-21814903 chr10:21815069-21815085
31	POLR2A	chr10:21811892-21818945	H1-neurons	neurons:	n/a	n/a
32	CEBPB	chr10:21813687-21814840	K562	blood:	n/a	n/a
33	POLR2A	chr10:21813549-21816618	K562	blood:	n/a	n/a
34	UBTF	chr10:21813706-21817147	K562	blood:	n/a	n/a
35	TBL1XR1	chr10:21813704-21816065	K562	blood:	n/a	n/a
36	KAP1	chr10:21813814-21814946	U2OS	brain:	n/a	n/a
37	SPI1	chr10:21813517-21814150	HL-60	blood:	n/a	chr10:21813766-21813775 chr10:21813764-21813777
38	MAX	chr10:21813333-21816596	HepG2	liver:	n/a	chr10:21816323-21816333 chr10:21815247-21815257 chr10:21814827-21814836 chr10:21813519-21813529
39	KAP1	chr10:21813731-21814864	HEK293	kidney:	n/a	n/a
40	POLR2A	chr10:21813534-21815023	HepG2	liver:	n/a	n/a
41	EP300	chr10:21813726-21815309	HepG2	liver:	n/a	chr10:21814732-21814748 chr10:21814995-21815011 chr10:21814888-21814904 chr10:21815261-21815277
42	MAX	chr10:21813003-21816989	HepG2	liver:	n/a	chr10:21816323-21816333 chr10:21815247-21815257 chr10:21816880-21816888 chr10:21814827-21814836 chr10:21813519-21813529
43	POLR2A	chr10:21813656-21817072	GM12891	blood:	n/a	n/a
44	POLR2A	chr10:21813582-21816675	K562	blood:	n/a	n/a
45	MAZ	chr10:21813884-21816598	HepG2	liver:	n/a	chr10:21816323-21816333 chr10:21815247-21815257 chr10:21814827-21814836
46	MAX	chr10:21813099-21815702	NB4	blood:	n/a	chr10:21815247-21815257 chr10:21814827-21814836 chr10:21813519-21813529
47	POLR2A	chr10:21813848-21815053	SK-N-SH	brain:	n/a	n/a
48	UBTF	chr10:21813596-21817189	K562	blood:	n/a	n/a
49	POLR2A	chr10:21813500-21816665	K562	blood:	n/a	n/a
50	CUX1	chr10:21813760-21814848	K562	blood:	n/a	chr10:21814355-21814364

No.	Distal block	Cell Line	Cell type
1	chr10:21783888..21789239-chr10:21811898..21819387,16	K562	blood:
2	chr10:21782892..21787980-chr10:21813728..21817191,12	MCF-7	breast:
3	chr10:21813127..21816333-chr10:22288541..22292562,4	K562	blood:
4	chr10:21783009..21787738-chr10:21813105..21820576,17	MCF-7	breast:
5	chr10:21813084..21814597-chr10:21884150..21887122,2	K562	blood:
6	chr10:21812847..21814748-chr10:21961916..21964331,2	MCF-7	breast:
7	chr10:21813597..21815483-chr6:26030304..26033115,2	K562	blood:

Variant related genes	Relation type
SKIDA1	TF binding region
ENSG00000136770	Chromatin interaction
ENSG00000204682	Chromatin interaction
ENSG00000124693	Chromatin interaction
ENSG00000222071	Chromatin interaction
ENSG00000078403	Chromatin interaction

Extended variants
information (count: 53 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs11817861	1.00[ASN][1000 genomes]
rs12354471	1.00[ASN][1000 genomes]
rs41304603	1.00[EUR][1000 genomes]
rs56789943	1.00[ASN][1000 genomes]
rs57375786	1.00[ASN][1000 genomes]
rs57427469	1.00[ASN][1000 genomes]
rs57962540	1.00[ASN][1000 genomes]
rs60058036	1.00[ASN][1000 genomes]
rs6482185	1.00[ASN][1000 genomes]
rs6482186	1.00[ASN][1000 genomes]
rs7070997	1.00[ASN][1000 genomes]
rs7072980	1.00[ASN][1000 genomes]
rs7073709	1.00[ASN][1000 genomes]
rs7075425	1.00[ASN][1000 genomes]
rs7077377	1.00[ASN][1000 genomes]
rs7079672	1.00[ASN][1000 genomes]
rs7087761	1.00[ASN][1000 genomes]
rs7089548	1.00[ASN][1000 genomes]
rs7091704	1.00[ASN][1000 genomes]
rs7095009	1.00[ASN][1000 genomes]
rs7100471	1.00[ASN][1000 genomes]
rs7100553	1.00[ASN][1000 genomes]
rs7101344	1.00[ASN][1000 genomes]
rs7899191	1.00[ASN][1000 genomes]
rs7901037	1.00[ASN][1000 genomes]
rs7902427	1.00[ASN][1000 genomes]
rs7903144	1.00[ASN][1000 genomes]
rs7909582	1.00[ASN][1000 genomes]
rs7911723	1.00[ASN][1000 genomes]
rs7912009	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:23 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv825284	chr10:21739527-21847437	Active TSS Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Enhancers Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	34 gene(s)	inside rSNPs	diseases
2	nsv825285	chr10:21742026-21874334	Strong transcription Weak transcription Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	34 gene(s)	inside rSNPs	diseases
3	nsv825286	chr10:21757784-21838890	Flanking Active TSS Bivalent/Poised TSS Weak transcription Active TSS Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	34 gene(s)	inside rSNPs	diseases
4	nsv825288	chr10:21759085-21831354	Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS Enhancers Strong transcription Weak transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	34 gene(s)	inside rSNPs	diseases
5	nsv825289	chr10:21762506-21845875	Strong transcription Enhancers Active TSS Bivalent/Poised TSS Flanking Active TSS Weak transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	34 gene(s)	inside rSNPs	diseases
6	nsv527055	chr10:21764019-21822856	Bivalent/Poised TSS Weak transcription Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	34 gene(s)	inside rSNPs	diseases
7	nsv825290	chr10:21777857-21830878	Active TSS Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Bivalent/Poised TSS Enhancers Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	33 gene(s)	inside rSNPs	diseases
8	nsv894936	chr10:21781589-21827796	Active TSS Bivalent/Poised TSS Weak transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Enhancers Genic enhancers Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	33 gene(s)	inside rSNPs	diseases
9	nsv550200	chr10:21782842-21824727	Active TSS Bivalent/Poised TSS Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	33 gene(s)	inside rSNPs	diseases
10	nsv894937	chr10:21782842-21827796	Enhancers Transcr. at gene 5' and 3' Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Weak transcription Bivalent Enhancer Strong transcription Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	33 gene(s)	inside rSNPs	diseases
11	nsv517469	chr10:21783634-21822856	Active TSS Bivalent Enhancer Flanking Active TSS Weak transcription Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	33 gene(s)	inside rSNPs	diseases
12	nsv894938	chr10:21784899-21827796	Enhancers Flanking Active TSS Active TSS Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	33 gene(s)	inside rSNPs	diseases
13	nsv894939	chr10:21789406-21830104	Bivalent Enhancer Enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS Weak transcription Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases
14	nsv825291	chr10:21792100-21830946	Active TSS Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Weak transcription Strong transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases
15	nsv894940	chr10:21796081-21823525	Active TSS Flanking Active TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases
16	nsv550201	chr10:21796081-21824727	Weak transcription Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases
17	nsv894941	chr10:21796081-21827796	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases
18	nsv894942	chr10:21798241-21823525	Flanking Active TSS Active TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases
19	nsv894943	chr10:21798241-21824619	Active TSS Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases
20	nsv894944	chr10:21798241-21827796	Flanking Active TSS Active TSS Weak transcription Bivalent Enhancer Enhancers Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases
21	nsv894945	chr10:21798241-21830104	Active TSS Bivalent Enhancer Enhancers Weak transcription Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases
22	nsv894946	chr10:21798241-21831215	Enhancers Bivalent/Poised TSS Weak transcription Flanking Active TSS Strong transcription Genic enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases
23	nsv1052477	chr10:21810270-21889726	Active TSS Genic enhancers Enhancers Weak transcription Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:120 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:21806800-21814200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr10:21807000-21814200	Weak transcription	Lung	lung
3	chr10:21807000-21814400	Weak transcription	Spleen	Spleen
4	chr10:21811800-21815000	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
5	chr10:21812400-21817400	Active TSS	Stomach Smooth Muscle	stomach
6	chr10:21812600-21815000	Flanking Active TSS	Primary hematopoietic stem cells	blood
7	chr10:21812800-21814000	Active TSS	Skeletal Muscle Male	skeletal muscle
8	chr10:21812800-21814200	Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
9	chr10:21812800-21814400	Flanking Active TSS	NHEK	skin
10	chr10:21812800-21818200	Active TSS	NHDF-Ad	bronchial
11	chr10:21812800-21818600	Active TSS	Right Atrium	heart
12	chr10:21813000-21814000	Flanking Active TSS	NH-A	brain
13	chr10:21813000-21816800	Active TSS	HUES6 Cell Line	embryonic stem cell
14	chr10:21813000-21816800	Active TSS	iPS-15b Cell Line	embryonic stem cell
15	chr10:21813000-21817200	Active TSS	Aorta	Aorta
16	chr10:21813000-21817400	Active TSS	Colon Smooth Muscle	Colon
17	chr10:21813000-21817400	Active TSS	Rectal Smooth Muscle	rectum
18	chr10:21813000-21818200	Active TSS	ES-WA7 Cell Line	embryonic stem cell
19	chr10:21813000-21818200	Active TSS	Brain Anterior Caudate	brain
20	chr10:21813000-21818400	Active TSS	ES-I3 Cell Line	embryonic stem cell
21	chr10:21813000-21818400	Active TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
22	chr10:21813000-21818400	Active TSS	HSMM	muscle
23	chr10:21813000-21818600	Active TSS	H1 Cell Line	embryonic stem cell
24	chr10:21813200-21814600	Flanking Active TSS	HUVEC	blood vessel
25	chr10:21813200-21816000	Active TSS	Fetal Heart	heart
26	chr10:21813200-21816600	Active TSS	iPS-18 Cell Line	embryonic stem cell
27	chr10:21813200-21817000	Active TSS	Fetal Stomach	stomach
28	chr10:21813200-21817400	Active TSS	Fetal Lung	lung
29	chr10:21813200-21817600	Active TSS	HUES64 Cell Line	embryonic stem cell
30	chr10:21813200-21817800	Active TSS	ES-UCSF4 Cell Line	embryonic stem cell
31	chr10:21813200-21818000	Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
32	chr10:21813200-21818200	Active TSS	H9 Cell Line	embryonic stem cell
33	chr10:21813200-21818200	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
34	chr10:21813200-21818200	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
35	chr10:21813200-21818200	Active TSS	HSMMtube	muscle
36	chr10:21813200-21818400	Active TSS	Ovary	ovary
37	chr10:21813200-21818600	Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
38	chr10:21813200-21818800	Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
39	chr10:21813200-21818800	Active TSS	K562	blood
40	chr10:21813400-21814000	Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
41	chr10:21813400-21814000	Flanking Active TSS	Fetal Brain Female	brain
42	chr10:21813400-21814000	Active TSS	Fetal Intestine Small	intestine
43	chr10:21813400-21814200	Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
44	chr10:21813400-21814200	Flanking Active TSS	Muscle Satellite Cultured Cells	--
45	chr10:21813400-21814400	Flanking Active TSS	HMEC	breast
46	chr10:21813400-21814600	Active TSS	Brain Germinal Matrix	brain
47	chr10:21813400-21814800	Flanking Active TSS	Adipose Nuclei	Adipose
48	chr10:21813400-21816600	Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
49	chr10:21813400-21816800	Active TSS	HUES48 Cell Line	embryonic stem cell
50	chr10:21813400-21816800	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links