Variant report

Variant	rs11817861
Chromosome Location	chr10:21842982-21842983
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:21824380..21826372-chr10:21842074..21844777,3	K562	blood:
2	chr10:21821456..21824364-chr10:21842977..21844752,2	K562	blood:
3	chr10:21841032..21843534-chr10:21848638..21850144,2	K562	blood:
4	chr10:21836408..21839153-chr10:21840601..21843518,2	K562	blood:
5	chr10:21822381..21824529-chr10:21841002..21843284,2	MCF-7	breast:
6	chr10:21835381..21838348-chr10:21840703..21843371,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000078403	Chromatin interaction

Extended variants
information (count: 45 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs11815111	1.00[ASN][1000 genomes]
rs12354471	1.00[ASN][1000 genomes]
rs56789943	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs57115266	1.00[ASN][1000 genomes]
rs57375786	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs57427469	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs57962540	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs60058036	0.96[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs61527072	0.86[AFR][1000 genomes]
rs6482185	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs6482186	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7070997	0.83[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs7071519	1.00[ASN][1000 genomes]
rs7072980	1.00[ASN][1000 genomes]
rs7073709	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7075425	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7077377	1.00[ASN][1000 genomes]
rs7079672	1.00[ASN][1000 genomes]
rs7087761	0.96[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs7089548	1.00[ASN][1000 genomes]
rs7091704	0.81[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs7095009	1.00[ASN][1000 genomes]
rs7100471	1.00[ASN][1000 genomes]
rs7100553	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7101344	1.00[ASN][1000 genomes]
rs7895753	1.00[ASN][1000 genomes]
rs7896281	1.00[ASN][1000 genomes]
rs7899191	1.00[ASN][1000 genomes]
rs7901037	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7901657	0.86[AFR][1000 genomes]
rs7902427	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7903144	1.00[ASN][1000 genomes]
rs7909529	1.00[ASN][1000 genomes]
rs7909582	1.00[ASN][1000 genomes]
rs7911723	1.00[ASN][1000 genomes]
rs7912009	0.81[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs9663287	1.00[ASN][1000 genomes]
rs9665499	0.83[AFR][1000 genomes]
rs9665526	1.00[ASN][1000 genomes]
rs9665607	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv825284	chr10:21739527-21847437	Active TSS Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Enhancers Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	34 gene(s)	inside rSNPs	diseases
2	nsv825285	chr10:21742026-21874334	Strong transcription Weak transcription Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	34 gene(s)	inside rSNPs	diseases
3	nsv825289	chr10:21762506-21845875	Strong transcription Enhancers Active TSS Bivalent/Poised TSS Flanking Active TSS Weak transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	34 gene(s)	inside rSNPs	diseases
4	nsv1052477	chr10:21810270-21889726	Active TSS Genic enhancers Enhancers Weak transcription Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases
5	nsv1036585	chr10:21833717-21998042	Weak transcription Strong transcription Enhancers ZNF genes & repeats Genic enhancers Active TSS Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:21824600-21864600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr10:21824600-21930400	Weak transcription	Gastric	stomach
3	chr10:21824800-21852200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr10:21824800-21852200	Strong transcription	Fetal Intestine Small	intestine
5	chr10:21824800-21860200	Weak transcription	Psoas Muscle	Psoas
6	chr10:21825000-21844200	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
7	chr10:21825000-21850000	Strong transcription	HUES64 Cell Line	embryonic stem cell
8	chr10:21825200-21850600	Strong transcription	Fetal Stomach	stomach
9	chr10:21825200-21854800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
10	chr10:21825600-21849800	Strong transcription	Primary monocytes fromperipheralblood	blood
11	chr10:21825600-21850000	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
12	chr10:21825600-21857800	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
13	chr10:21825800-21844400	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
14	chr10:21825800-21856200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
15	chr10:21826200-21844200	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
16	chr10:21826200-21850600	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
17	chr10:21826800-21844800	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
18	chr10:21827800-21850800	Strong transcription	Breast Myoepithelial Primary Cells	Breast
19	chr10:21828000-21851200	Strong transcription	Primary hematopoietic stem cells short term culture	blood
20	chr10:21828000-21856600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
21	chr10:21828400-21845200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
22	chr10:21832000-21856400	Weak transcription	Colonic Mucosa	Colon
23	chr10:21832000-21876400	Weak transcription	Aorta	Aorta
24	chr10:21832200-21848000	Weak transcription	Esophagus	oesophagus
25	chr10:21832800-21856200	Weak transcription	Pancreas	Pancrea
26	chr10:21833400-21851200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
27	chr10:21833400-21856200	Weak transcription	Small Intestine	intestine
28	chr10:21833400-21856400	Weak transcription	Colon Smooth Muscle	Colon
29	chr10:21833600-21848000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
30	chr10:21834400-21847800	Weak transcription	Brain Angular Gyrus	brain
31	chr10:21834800-21843600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
32	chr10:21834800-21845000	Weak transcription	Primary B cells from cord blood	blood
33	chr10:21835200-21848000	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
34	chr10:21835600-21850000	Strong transcription	Dnd41	blood
35	chr10:21835800-21843200	Strong transcription	Muscle Satellite Cultured Cells	--
36	chr10:21835800-21850000	Strong transcription	Monocytes-CD14+_RO01746	blood
37	chr10:21836600-21850000	Strong transcription	Primary T helper cells fromperipheralblood	blood
38	chr10:21837200-21847000	Strong transcription	Primary T cells from cord blood	blood
39	chr10:21837200-21849600	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
40	chr10:21837600-21846800	Strong transcription	Adipose Nuclei	Adipose
41	chr10:21837600-21849800	Strong transcription	HUES48 Cell Line	embryonic stem cell
42	chr10:21837600-21850000	Strong transcription	iPS-18 Cell Line	embryonic stem cell
43	chr10:21837600-21850400	Strong transcription	Fetal Muscle Leg	muscle
44	chr10:21837800-21844600	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
45	chr10:21837800-21846800	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
46	chr10:21837800-21849800	Strong transcription	iPS-20b Cell Line	embryonic stem cell
47	chr10:21837800-21849800	Strong transcription	Fetal Thymus	thymus
48	chr10:21838000-21847000	Strong transcription	Fetal Muscle Trunk	muscle
49	chr10:21838000-21848400	Strong transcription	Fetal Intestine Large	intestine
50	chr10:21838000-21849800	Strong transcription	H1 Cell Line	embryonic stem cell

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