Variant report

Variant	rs7087761
Chromosome Location	chr10:21867288-21867289
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 50 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:42)

rs_ID	r²[population]
rs11815111	1.00[ASN][1000 genomes]
rs11817861	0.96[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs12354471	1.00[ASN][1000 genomes]
rs56789943	0.96[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs57115266	1.00[ASN][1000 genomes]
rs57375786	0.96[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs57427469	0.96[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs57962540	0.90[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs60058036	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs61527072	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6482185	0.96[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs6482186	0.95[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs7070997	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7071519	1.00[ASN][1000 genomes]
rs7072340	1.00[ASN][1000 genomes]
rs7072980	1.00[ASN][1000 genomes]
rs7073709	0.83[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs7075425	0.96[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs7077377	1.00[ASN][1000 genomes]
rs7079672	1.00[ASN][1000 genomes]
rs7089548	1.00[ASN][1000 genomes]
rs7091704	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7095009	1.00[ASN][1000 genomes]
rs7100471	1.00[ASN][1000 genomes]
rs7100553	0.96[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs7101344	1.00[ASN][1000 genomes]
rs7895753	1.00[ASN][1000 genomes]
rs7896281	1.00[ASN][1000 genomes]
rs7899191	1.00[ASN][1000 genomes]
rs7901037	0.90[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs7901657	0.92[YRI][hapmap];0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7902427	0.96[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs7903144	1.00[ASN][1000 genomes]
rs7909529	1.00[ASN][1000 genomes]
rs7909582	1.00[ASN][1000 genomes]
rs7911723	1.00[ASN][1000 genomes]
rs7912009	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7916606	1.00[ASN][1000 genomes]
rs9663287	1.00[ASN][1000 genomes]
rs9665499	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9665526	1.00[ASN][1000 genomes]
rs9665607	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv825285	chr10:21742026-21874334	Strong transcription Weak transcription Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	34 gene(s)	inside rSNPs	diseases
2	nsv1052477	chr10:21810270-21889726	Active TSS Genic enhancers Enhancers Weak transcription Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases
3	nsv1036585	chr10:21833717-21998042	Weak transcription Strong transcription Enhancers ZNF genes & repeats Genic enhancers Active TSS Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
4	nsv947765	chr10:21845377-21874408	Genic enhancers Strong transcription Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
5	nsv550202	chr10:21856475-22027644	Strong transcription Weak transcription Enhancers Genic enhancers Flanking Active TSS ZNF genes & repeats Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
6	nsv1052464	chr10:21856531-22220087	Weak transcription Strong transcription ZNF genes & repeats Enhancers Genic enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
7	esv12099	chr10:21857163-21867961	Weak transcription Strong transcription Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats	TF binding region Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
8	esv1802317	chr10:21866085-22288132	Strong transcription Enhancers Weak transcription ZNF genes & repeats Genic enhancers Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:115 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:21824600-21930400	Weak transcription	Gastric	stomach
2	chr10:21832000-21876400	Weak transcription	Aorta	Aorta
3	chr10:21839400-21878200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
4	chr10:21839800-21880200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
5	chr10:21840000-21877200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
6	chr10:21841200-21897200	Weak transcription	Fetal Kidney	kidney
7	chr10:21841600-21870000	Weak transcription	Right Ventricle	heart
8	chr10:21842200-21897200	Weak transcription	Fetal Brain Male	brain
9	chr10:21844600-21896600	Weak transcription	Hela-S3	cervix
10	chr10:21846800-21874000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
11	chr10:21846800-21874800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
12	chr10:21846800-21882200	Weak transcription	Brain Germinal Matrix	brain
13	chr10:21846800-21889600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
14	chr10:21846800-21892800	Weak transcription	HSMMtube	muscle
15	chr10:21846800-21913600	Weak transcription	Rectal Smooth Muscle	rectum
16	chr10:21847000-21901200	Weak transcription	HUVEC	blood vessel
17	chr10:21848800-21914200	Weak transcription	Duodenum Smooth Muscle	Duodenum
18	chr10:21849200-21870400	Weak transcription	NH-A	brain
19	chr10:21849400-21889600	Weak transcription	NHEK	skin
20	chr10:21849400-21913600	Weak transcription	Esophagus	oesophagus
21	chr10:21849800-21872400	Weak transcription	Primary B cells from cord blood	blood
22	chr10:21849800-21874400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
23	chr10:21849800-21889400	Weak transcription	Brain Hippocampus Middle	brain
24	chr10:21849800-21894600	Weak transcription	Rectal Mucosa Donor 29	rectum
25	chr10:21849800-21897000	Weak transcription	Fetal Brain Female	brain
26	chr10:21850400-21875600	Weak transcription	Fetal Muscle Trunk	muscle
27	chr10:21850800-21873400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
28	chr10:21850800-21889600	Weak transcription	HMEC	breast
29	chr10:21853400-21875000	Weak transcription	Fetal Intestine Large	intestine
30	chr10:21856200-21872600	Weak transcription	Primary hematopoietic stem cells	blood
31	chr10:21856400-21876000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
32	chr10:21856600-21870200	Weak transcription	Fetal Thymus	thymus
33	chr10:21856600-21872600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
34	chr10:21856600-21874400	Weak transcription	Thymus	Thymus
35	chr10:21856600-21874800	Weak transcription	Placenta	Placenta
36	chr10:21856600-21876000	Weak transcription	Duodenum Mucosa	Duodenum
37	chr10:21856600-21876000	Weak transcription	Fetal Muscle Leg	muscle
38	chr10:21856600-21877400	Weak transcription	Fetal Lung	lung
39	chr10:21856800-21870600	Weak transcription	Colonic Mucosa	Colon
40	chr10:21856800-21872200	Weak transcription	Cortex derived primary cultured neurospheres	brain
41	chr10:21856800-21913400	Weak transcription	Rectal Mucosa Donor 31	rectum
42	chr10:21859200-21875600	Weak transcription	Left Ventricle	heart
43	chr10:21859400-21870400	Weak transcription	Right Atrium	heart
44	chr10:21859400-21874000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
45	chr10:21859400-21889800	Weak transcription	Pancreas	Pancrea
46	chr10:21860400-21886600	Weak transcription	Small Intestine	intestine
47	chr10:21860600-21876200	Weak transcription	Primary T cells fromperipheralblood	blood
48	chr10:21860600-21879000	Weak transcription	Lung	lung
49	chr10:21860600-21895400	Weak transcription	H1 Cell Line	embryonic stem cell
50	chr10:21860800-21871400	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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