Variant report

Variant	rs7100553
Chromosome Location	chr10:21860352-21860353
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 48 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs11815111	1.00[ASN][1000 genomes]
rs11817861	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12354471	1.00[ASN][1000 genomes]
rs56789943	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs57115266	1.00[ASN][1000 genomes]
rs57375786	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs57427469	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs57962540	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs60058036	0.96[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs61527072	0.86[AFR][1000 genomes]
rs6482185	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs6482186	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7070997	0.83[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs7071519	1.00[ASN][1000 genomes]
rs7072340	1.00[ASN][1000 genomes]
rs7072980	1.00[ASN][1000 genomes]
rs7073709	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7075425	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7077377	1.00[ASN][1000 genomes]
rs7079672	1.00[ASN][1000 genomes]
rs7087761	0.96[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs7089548	1.00[ASN][1000 genomes]
rs7091704	0.81[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs7095009	1.00[ASN][1000 genomes]
rs7100471	1.00[ASN][1000 genomes]
rs7101344	1.00[ASN][1000 genomes]
rs7895753	1.00[ASN][1000 genomes]
rs7896281	1.00[ASN][1000 genomes]
rs7899191	1.00[ASN][1000 genomes]
rs7901037	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7901657	0.86[AFR][1000 genomes]
rs7902427	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7903144	1.00[ASN][1000 genomes]
rs7909529	1.00[ASN][1000 genomes]
rs7909582	1.00[ASN][1000 genomes]
rs7911723	1.00[ASN][1000 genomes]
rs7912009	0.81[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs9663287	1.00[ASN][1000 genomes]
rs9665499	0.83[AFR][1000 genomes]
rs9665526	1.00[ASN][1000 genomes]
rs9665607	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv825285	chr10:21742026-21874334	Strong transcription Weak transcription Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	34 gene(s)	inside rSNPs	diseases
2	nsv1052477	chr10:21810270-21889726	Active TSS Genic enhancers Enhancers Weak transcription Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases
3	nsv1036585	chr10:21833717-21998042	Weak transcription Strong transcription Enhancers ZNF genes & repeats Genic enhancers Active TSS Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
4	nsv947765	chr10:21845377-21874408	Genic enhancers Strong transcription Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
5	nsv550202	chr10:21856475-22027644	Strong transcription Weak transcription Enhancers Genic enhancers Flanking Active TSS ZNF genes & repeats Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
6	nsv1052464	chr10:21856531-22220087	Weak transcription Strong transcription ZNF genes & repeats Enhancers Genic enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
7	esv12099	chr10:21857163-21867961	Weak transcription Strong transcription Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats	TF binding region Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:121 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:21824600-21864600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr10:21824600-21930400	Weak transcription	Gastric	stomach
3	chr10:21832000-21876400	Weak transcription	Aorta	Aorta
4	chr10:21839000-21864200	Weak transcription	Fetal Heart	heart
5	chr10:21839400-21878200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
6	chr10:21839600-21860600	Weak transcription	Brain Substantia Nigra	brain
7	chr10:21839800-21880200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
8	chr10:21840000-21877200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
9	chr10:21841200-21861600	Weak transcription	Skeletal Muscle Male	skeletal muscle
10	chr10:21841200-21897200	Weak transcription	Fetal Kidney	kidney
11	chr10:21841600-21870000	Weak transcription	Right Ventricle	heart
12	chr10:21842200-21897200	Weak transcription	Fetal Brain Male	brain
13	chr10:21844000-21862200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
14	chr10:21844600-21896600	Weak transcription	Hela-S3	cervix
15	chr10:21845800-21862000	Weak transcription	Stomach Smooth Muscle	stomach
16	chr10:21846600-21860800	Weak transcription	Brain Cingulate Gyrus	brain
17	chr10:21846800-21861400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
18	chr10:21846800-21874000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
19	chr10:21846800-21874800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
20	chr10:21846800-21882200	Weak transcription	Brain Germinal Matrix	brain
21	chr10:21846800-21889600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
22	chr10:21846800-21892800	Weak transcription	HSMMtube	muscle
23	chr10:21846800-21913600	Weak transcription	Rectal Smooth Muscle	rectum
24	chr10:21847000-21901200	Weak transcription	HUVEC	blood vessel
25	chr10:21848200-21860400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
26	chr10:21848400-21865000	Weak transcription	Sigmoid Colon	Sigmoid Colon
27	chr10:21848800-21861200	Weak transcription	Muscle Satellite Cultured Cells	--
28	chr10:21848800-21861600	Weak transcription	Brain Inferior Temporal Lobe	brain
29	chr10:21848800-21914200	Weak transcription	Duodenum Smooth Muscle	Duodenum
30	chr10:21849200-21870400	Weak transcription	NH-A	brain
31	chr10:21849400-21889600	Weak transcription	NHEK	skin
32	chr10:21849400-21913600	Weak transcription	Esophagus	oesophagus
33	chr10:21849800-21860400	Weak transcription	NHDF-Ad	bronchial
34	chr10:21849800-21860600	Weak transcription	HUES48 Cell Line	embryonic stem cell
35	chr10:21849800-21861000	Weak transcription	Brain Anterior Caudate	brain
36	chr10:21849800-21861400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
37	chr10:21849800-21861600	Weak transcription	Skeletal Muscle Female	skeletal muscle
38	chr10:21849800-21872400	Weak transcription	Primary B cells from cord blood	blood
39	chr10:21849800-21874400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
40	chr10:21849800-21889400	Weak transcription	Brain Hippocampus Middle	brain
41	chr10:21849800-21894600	Weak transcription	Rectal Mucosa Donor 29	rectum
42	chr10:21849800-21897000	Weak transcription	Fetal Brain Female	brain
43	chr10:21850000-21861200	Weak transcription	Osteobl	bone
44	chr10:21850400-21875600	Weak transcription	Fetal Muscle Trunk	muscle
45	chr10:21850800-21873400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
46	chr10:21850800-21889600	Weak transcription	HMEC	breast
47	chr10:21853200-21861000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
48	chr10:21853400-21860400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
49	chr10:21853400-21861400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
50	chr10:21853400-21875000	Weak transcription	Fetal Intestine Large	intestine

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