Variant report

Variant	rs10032183
Chromosome Location	chr4:74387218-74387219
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10000698	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10011693	1.00[AMR][1000 genomes]
rs10015321	1.00[AMR][1000 genomes]
rs10015884	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10034509	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10049835	1.00[AMR][1000 genomes]
rs1105321	1.00[AMR][1000 genomes]
rs12331864	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1528922	0.83[AMR][1000 genomes]
rs16849498	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2367164	1.00[AMR][1000 genomes]
rs28533985	1.00[AMR][1000 genomes]
rs28562313	1.00[AMR][1000 genomes]
rs28570600	1.00[AMR][1000 genomes]
rs28649464	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28651748	1.00[AMR][1000 genomes]
rs28755465	1.00[AMR][1000 genomes]
rs6831133	1.00[AMR][1000 genomes]
rs7356389	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9291186	1.00[AMR][1000 genomes]
rs9995788	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3430875	chr4:74243646-74420354	Weak transcription Genic enhancers Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv1001725	chr4:74354050-74860924	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
3	nsv530126	chr4:74376622-74843892	Bivalent Enhancer Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Active TSS Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
4	esv3364178	chr4:74383966-74400177	Enhancers Bivalent Enhancer Strong transcription Weak transcription ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Genic enhancers	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:74374600-74399000	Weak transcription	Fetal Intestine Large	intestine
2	chr4:74382000-74394200	Strong transcription	Liver	Liver
3	chr4:74386200-74387400	Enhancers	ES-I3 Cell Line	embryonic stem cell
4	chr4:74386200-74387400	Enhancers	HUES64 Cell Line	embryonic stem cell
5	chr4:74386200-74387600	Enhancers	Dnd41	blood
6	chr4:74386200-74387600	Enhancers	Osteobl	bone
7	chr4:74386200-74387800	Enhancers	iPS-18 Cell Line	embryonic stem cell
8	chr4:74386200-74387800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
9	chr4:74386200-74390400	Strong transcription	Fetal Intestine Small	intestine
10	chr4:74386400-74387600	Enhancers	iPS-15b Cell Line	embryonic stem cell
11	chr4:74386400-74387800	Enhancers	HUES48 Cell Line	embryonic stem cell
12	chr4:74386400-74387800	Enhancers	iPS-20b Cell Line	embryonic stem cell
13	chr4:74386400-74388200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
14	chr4:74386600-74387600	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
15	chr4:74386800-74387400	Flanking Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
16	chr4:74386800-74387600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
17	chr4:74387000-74387600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
18	chr4:74387000-74388000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
19	chr4:74387000-74390400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
20	chr4:74387200-74387400	Flanking Bivalent TSS/Enh	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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