Variant report

Variant	rs28651748
Chromosome Location	chr4:74444625-74444626
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:74442868..74445735-chr4:74451381..74454006,2	K562	blood:

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs10000698	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10011693	1.00[AMR][1000 genomes]
rs10015321	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10015884	1.00[AMR][1000 genomes]
rs10032183	1.00[AMR][1000 genomes]
rs10034509	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10049835	1.00[AMR][1000 genomes]
rs1105321	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12331864	1.00[AMR][1000 genomes]
rs1528922	0.83[AMR][1000 genomes]
rs16849498	1.00[AMR][1000 genomes]
rs16849677	0.82[AFR][1000 genomes]
rs2367164	1.00[AMR][1000 genomes]
rs28533985	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28562313	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28570600	1.00[AMR][1000 genomes]
rs28612539	0.82[AFR][1000 genomes]
rs28649464	1.00[AMR][1000 genomes]
rs28755465	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs34123018	0.91[AFR][1000 genomes]
rs6831133	1.00[AMR][1000 genomes]
rs7356389	1.00[AMR][1000 genomes]
rs9291186	1.00[AMR][1000 genomes]
rs9995788	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1001725	chr4:74354050-74860924	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
2	nsv530126	chr4:74376622-74843892	Bivalent Enhancer Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Active TSS Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
3	esv1792624	chr4:74437054-74453857	Enhancers Weak transcription Strong transcription Genic enhancers Flanking Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA miRNA target site	n/a	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:74438000-74464800	Weak transcription	Sigmoid Colon	Sigmoid Colon
2	chr4:74439000-74448400	Weak transcription	Fetal Intestine Large	intestine
3	chr4:74439800-74448600	Weak transcription	Rectal Mucosa Donor 31	rectum
4	chr4:74440200-74447000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
5	chr4:74440200-74447000	Weak transcription	Thymus	Thymus
6	chr4:74440200-74449000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
7	chr4:74440200-74449600	Weak transcription	H9 Cell Line	embryonic stem cell
8	chr4:74440200-74451200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
9	chr4:74440200-74455200	Weak transcription	Fetal Intestine Small	intestine
10	chr4:74440200-74457400	Weak transcription	Pancreas	Pancrea
11	chr4:74440200-74472600	Weak transcription	Gastric	stomach
12	chr4:74441200-74445000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
13	chr4:74441200-74464800	Weak transcription	Placenta	Placenta
14	chr4:74442200-74450200	Weak transcription	Muscle Satellite Cultured Cells	--
15	chr4:74442400-74447000	Weak transcription	Pancreatic Islets	Pancreatic Islet
16	chr4:74442600-74444800	Strong transcription	Fetal Thymus	thymus
17	chr4:74442600-74447000	Weak transcription	HUES48 Cell Line	embryonic stem cell
18	chr4:74442600-74449400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
19	chr4:74442800-74448800	Weak transcription	HMEC	breast
20	chr4:74443000-74445400	Strong transcription	Breast Myoepithelial Primary Cells	Breast
21	chr4:74443400-74447000	Weak transcription	Rectal Mucosa Donor 29	rectum
22	chr4:74443600-74445600	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
23	chr4:74443600-74455400	Weak transcription	Stomach Mucosa	stomach

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