Variant report

Variant	rs1528922
Chromosome Location	chr4:74375060-74375061
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10000698	0.83[AMR][1000 genomes]
rs10011693	0.93[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs10015321	0.83[AMR][1000 genomes]
rs10015884	0.83[AMR][1000 genomes]
rs10032183	0.83[AMR][1000 genomes]
rs10034509	0.83[AMR][1000 genomes]
rs10049835	0.83[AMR][1000 genomes]
rs1105321	0.86[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs12331864	0.81[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs16849498	0.83[AMR][1000 genomes]
rs2367164	0.83[AMR][1000 genomes]
rs28533985	0.83[AMR][1000 genomes]
rs28562313	0.83[AMR][1000 genomes]
rs28570600	0.83[AMR][1000 genomes]
rs28649464	0.83[AMR][1000 genomes]
rs28651748	0.83[AMR][1000 genomes]
rs28755465	0.83[AMR][1000 genomes]
rs6831133	0.92[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs7356389	0.83[AMR][1000 genomes]
rs9291186	0.83[AMR][1000 genomes]
rs9995788	0.83[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3430875	chr4:74243646-74420354	Weak transcription Genic enhancers Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv1001725	chr4:74354050-74860924	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:74374600-74375400	Weak transcription	Liver	Liver
2	chr4:74374600-74383800	Weak transcription	Fetal Intestine Small	intestine
3	chr4:74374600-74399000	Weak transcription	Fetal Intestine Large	intestine

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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