Variant report

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-AFM-1	chr4:74394130-74395572	NONHSAT096858
2	lnc-AFM-1	chr4:74394130-74395572	NONHSAT096860

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs10000698	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10003721	1.00[MEX][hapmap]
rs10011693	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10015321	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10015884	1.00[AMR][1000 genomes]
rs10019146	0.91[LWK][hapmap]
rs10032183	1.00[AMR][1000 genomes]
rs10034509	0.89[ASW][hapmap];0.88[MKK][hapmap];0.85[YRI][hapmap];1.00[AMR][1000 genomes]
rs10049835	0.90[YRI][hapmap];0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1105321	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12331864	1.00[AMR][1000 genomes]
rs12503916	0.91[LWK][hapmap]
rs12507775	0.91[LWK][hapmap]
rs1528922	0.92[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs16849498	1.00[ASW][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.86[YRI][hapmap];1.00[AMR][1000 genomes]
rs16849628	0.91[LWK][hapmap]
rs2367164	1.00[AMR][1000 genomes]
rs28533985	1.00[AMR][1000 genomes]
rs28562313	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28570600	1.00[AMR][1000 genomes]
rs28649464	1.00[AMR][1000 genomes]
rs28651748	1.00[AMR][1000 genomes]
rs28755465	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs3756068	1.00[MEX][hapmap]
rs3822100	0.81[YRI][hapmap]
rs7356389	1.00[AMR][1000 genomes]
rs7682201	0.91[LWK][hapmap]
rs9291186	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9995788	0.86[YRI][hapmap];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3430875	chr4:74243646-74420354	Weak transcription Genic enhancers Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv1001725	chr4:74354050-74860924	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
3	nsv530126	chr4:74376622-74843892	Bivalent Enhancer Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Active TSS Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
4	esv3364178	chr4:74383966-74400177	Enhancers Bivalent Enhancer Strong transcription Weak transcription ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Genic enhancers	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:74374600-74399000	Weak transcription	Fetal Intestine Large	intestine
2	chr4:74390400-74399800	Weak transcription	Fetal Intestine Small	intestine
3	chr4:74394200-74400000	Genic enhancers	Liver	Liver

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