Variant report

Variant	rs28649464
Chromosome Location	chr4:74366646-74366647
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10000698	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10011693	1.00[AMR][1000 genomes]
rs10015321	1.00[AMR][1000 genomes]
rs10015884	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10032183	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10034509	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10049835	1.00[AMR][1000 genomes]
rs1105321	1.00[AMR][1000 genomes]
rs12331864	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1528922	0.83[AMR][1000 genomes]
rs16849498	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2367164	1.00[AMR][1000 genomes]
rs28533985	1.00[AMR][1000 genomes]
rs28562313	1.00[AMR][1000 genomes]
rs28570600	1.00[AMR][1000 genomes]
rs28651748	1.00[AMR][1000 genomes]
rs28755465	1.00[AMR][1000 genomes]
rs6831133	1.00[AMR][1000 genomes]
rs7356389	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9291186	1.00[AMR][1000 genomes]
rs9995788	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3430875	chr4:74243646-74420354	Weak transcription Genic enhancers Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv1001725	chr4:74354050-74860924	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:74361800-74371800	Genic enhancers	Liver	Liver
2	chr4:74364800-74368000	Weak transcription	K562	blood
3	chr4:74366000-74366800	Active TSS	NHLF	lung
4	chr4:74366400-74367400	Weak transcription	Fetal Lung	lung
5	chr4:74366600-74366800	Flanking Active TSS	NHEK	skin
6	chr4:74366600-74367000	Weak transcription	HepG2	liver
7	chr4:74366600-74367200	Weak transcription	Fetal Stomach	stomach
8	chr4:74366600-74368200	Weak transcription	Ovary	ovary
9	chr4:74366600-74372400	Weak transcription	Fetal Intestine Small	intestine
10	chr4:74366600-74373000	Weak transcription	Fetal Intestine Large	intestine

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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