Variant report

Variant	rs2367164
Chromosome Location	chr4:74522317-74522318
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:74453887..74455489-chr4:74521992..74524890,2	MCF-7	breast:

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10000698	1.00[AMR][1000 genomes]
rs10011693	1.00[AMR][1000 genomes]
rs10015321	1.00[AMR][1000 genomes]
rs10015884	1.00[AMR][1000 genomes]
rs10032183	1.00[AMR][1000 genomes]
rs10034509	1.00[AMR][1000 genomes]
rs10049835	1.00[AMR][1000 genomes]
rs1105321	1.00[AMR][1000 genomes]
rs12331864	1.00[AMR][1000 genomes]
rs1528922	0.83[AMR][1000 genomes]
rs16849498	1.00[AMR][1000 genomes]
rs28533985	1.00[AMR][1000 genomes]
rs28562313	1.00[AMR][1000 genomes]
rs28570600	1.00[AMR][1000 genomes]
rs28649464	1.00[AMR][1000 genomes]
rs28651748	1.00[AMR][1000 genomes]
rs28755465	1.00[AMR][1000 genomes]
rs6831133	1.00[AMR][1000 genomes]
rs7356389	1.00[AMR][1000 genomes]
rs9291186	1.00[AMR][1000 genomes]
rs9995788	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1001725	chr4:74354050-74860924	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
2	nsv530126	chr4:74376622-74843892	Bivalent Enhancer Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Active TSS Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
3	nsv1008104	chr4:74468434-74621952	Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
4	nsv1012198	chr4:74487793-74621952	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
5	nsv537139	chr4:74487793-74621952	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:74516400-74525000	Weak transcription	Stomach Mucosa	stomach
2	chr4:74517400-74526400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr4:74519000-74526400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
4	chr4:74519200-74527200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
5	chr4:74520000-74526200	Weak transcription	HUVEC	blood vessel
6	chr4:74521200-74530000	Weak transcription	Thymus	Thymus
7	chr4:74521400-74528400	Weak transcription	Fetal Thymus	thymus
8	chr4:74521600-74527400	Weak transcription	Dnd41	blood

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