Variant report

Variant	rs9291186
Chromosome Location	chr4:74488444-74488445
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	TCF7L2	chr4:74488216-74488461	PANC-1	pancreas:	n/a	n/a

Variant related genes	Relation type
RASSF6	TF binding region

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs10000698	1.00[AMR][1000 genomes]
rs10011693	1.00[AMR][1000 genomes]
rs10015321	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10015884	1.00[AMR][1000 genomes]
rs10032183	1.00[AMR][1000 genomes]
rs10034509	1.00[AMR][1000 genomes]
rs10049835	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1074085	0.81[AFR][1000 genomes]
rs1105321	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12331864	1.00[AMR][1000 genomes]
rs1528922	0.83[AMR][1000 genomes]
rs16849498	1.00[AMR][1000 genomes]
rs2367164	1.00[AMR][1000 genomes]
rs28533985	1.00[AMR][1000 genomes]
rs28562313	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28570600	1.00[AMR][1000 genomes]
rs28649464	1.00[AMR][1000 genomes]
rs28651748	1.00[AMR][1000 genomes]
rs28755465	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6831133	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7356389	1.00[AMR][1000 genomes]
rs9995788	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1001725	chr4:74354050-74860924	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
2	nsv530126	chr4:74376622-74843892	Bivalent Enhancer Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Active TSS Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
3	nsv1008104	chr4:74468434-74621952	Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
4	nsv1012198	chr4:74487793-74621952	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
5	nsv537139	chr4:74487793-74621952	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:74485800-74490600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
2	chr4:74486200-74497200	Weak transcription	Gastric	stomach
3	chr4:74486800-74489000	Weak transcription	Pancreatic Islets	Pancreatic Islet
4	chr4:74486800-74489400	Weak transcription	Sigmoid Colon	Sigmoid Colon
5	chr4:74486800-74489600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
6	chr4:74486800-74490200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
7	chr4:74487000-74490200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
8	chr4:74487600-74488600	Enhancers	Breast Myoepithelial Primary Cells	Breast
9	chr4:74488000-74495600	Weak transcription	Fetal Lung	lung

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