Variant report

Variant	rs10037368
Chromosome Location	chr5:147721881-147721882
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs10040393	1.00[AMR][1000 genomes]
rs10040505	1.00[ASW][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10042851	1.00[AMR][1000 genomes]
rs10044087	1.00[AMR][1000 genomes]
rs10045091	1.00[AMR][1000 genomes]
rs10045756	1.00[AMR][1000 genomes]
rs10052377	1.00[AMR][1000 genomes]
rs10056478	1.00[YRI][hapmap];0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10057961	1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs10065391	1.00[AMR][1000 genomes]
rs10066963	1.00[AMR][1000 genomes]
rs10068025	1.00[AMR][1000 genomes]
rs10068442	1.00[AMR][1000 genomes]
rs10069937	1.00[AMR][1000 genomes]
rs10070008	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10070268	1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs10071193	1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs10072138	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10076153	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10077891	1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs10079807	1.00[AMR][1000 genomes]
rs10447230	1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10476893	1.00[LWK][hapmap];1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs10477375	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10477377	1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs11953609	1.00[AMR][1000 genomes]
rs12332247	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13328218	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13356990	1.00[AMR][1000 genomes]
rs1549885	1.00[CEU][hapmap]
rs28477447	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28488637	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28503435	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57679720	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv883015	chr5:147404281-147751035	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:147709400-147749200	Weak transcription	Psoas Muscle	Psoas
2	chr5:147713000-147728800	Weak transcription	Aorta	Aorta
3	chr5:147714800-147731200	Weak transcription	Pancreas	Pancrea
4	chr5:147716800-147722800	Weak transcription	Sigmoid Colon	Sigmoid Colon
5	chr5:147717000-147722200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
6	chr5:147717000-147722200	Weak transcription	NHEK	skin
7	chr5:147718400-147723000	Weak transcription	Colon Smooth Muscle	Colon
8	chr5:147721600-147722800	Weak transcription	Esophagus	oesophagus
9	chr5:147721600-147723600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
10	chr5:147721600-147729000	Weak transcription	Left Ventricle	heart
11	chr5:147721800-147723800	Enhancers	HMEC	breast

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