Variant report
| Variant | rs13356990 |
|---|---|
| Chromosome Location | chr5:147857028-147857029 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr5:147849607..147852035-chr5:147856410..147859255,2 | K562 | blood: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:33)
| rs_ID | r2[population] |
|---|---|
| rs10037368 | 1.00[AMR][1000 genomes] |
| rs10040393 | 1.00[AMR][1000 genomes] |
| rs10040505 | 1.00[AMR][1000 genomes] |
| rs10042851 | 1.00[AMR][1000 genomes] |
| rs10044087 | 1.00[AMR][1000 genomes] |
| rs10045091 | 1.00[AMR][1000 genomes] |
| rs10045756 | 1.00[AMR][1000 genomes] |
| rs10052377 | 1.00[AMR][1000 genomes] |
| rs10056478 | 1.00[AMR][1000 genomes] |
| rs10057961 | 1.00[AMR][1000 genomes] |
| rs10065391 | 1.00[AMR][1000 genomes] |
| rs10066963 | 1.00[AMR][1000 genomes] |
| rs10068025 | 1.00[AMR][1000 genomes] |
| rs10068442 | 1.00[AMR][1000 genomes] |
| rs10069937 | 1.00[AMR][1000 genomes] |
| rs10070008 | 1.00[AMR][1000 genomes] |
| rs10070268 | 1.00[AMR][1000 genomes] |
| rs10071193 | 1.00[AMR][1000 genomes] |
| rs10072138 | 1.00[AMR][1000 genomes] |
| rs10076153 | 1.00[AMR][1000 genomes] |
| rs10077891 | 1.00[AMR][1000 genomes] |
| rs10079807 | 1.00[AMR][1000 genomes] |
| rs10447230 | 1.00[AMR][1000 genomes] |
| rs10476893 | 1.00[AMR][1000 genomes] |
| rs10477375 | 1.00[AMR][1000 genomes] |
| rs10477377 | 1.00[AMR][1000 genomes] |
| rs11953609 | 1.00[AMR][1000 genomes] |
| rs12332247 | 1.00[AMR][1000 genomes] |
| rs13328218 | 1.00[AMR][1000 genomes] |
| rs28477447 | 1.00[AMR][1000 genomes] |
| rs28488637 | 1.00[AMR][1000 genomes] |
| rs28503435 | 1.00[AMR][1000 genomes] |
| rs57679720 | 1.00[AMR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv830516 | chr5:147801104-147966093 | Weak transcription Enhancers Strong transcription Genic enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr5:147854000-147861200 | Weak transcription | Fetal Adrenal Gland | Adrenal Gland |
