Variant report

Variant	rs10042851
Chromosome Location	chr5:147855039-147855040
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs10037368	1.00[AMR][1000 genomes]
rs10040393	1.00[AMR][1000 genomes]
rs10040505	0.82[YRI][hapmap];1.00[AMR][1000 genomes]
rs10044087	1.00[AMR][1000 genomes]
rs10045091	1.00[AMR][1000 genomes]
rs10045756	1.00[AMR][1000 genomes]
rs10052377	1.00[AMR][1000 genomes]
rs10056478	1.00[AMR][1000 genomes]
rs10057961	1.00[AMR][1000 genomes]
rs10065391	1.00[AMR][1000 genomes]
rs10066963	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10068025	1.00[AMR][1000 genomes]
rs10068442	1.00[AMR][1000 genomes]
rs10069937	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10070008	1.00[AMR][1000 genomes]
rs10070268	1.00[AMR][1000 genomes]
rs10071193	1.00[AMR][1000 genomes]
rs10072138	1.00[AMR][1000 genomes]
rs10076153	1.00[AMR][1000 genomes]
rs10077891	1.00[AMR][1000 genomes]
rs10079807	1.00[AMR][1000 genomes]
rs10447230	0.82[YRI][hapmap];1.00[AMR][1000 genomes]
rs10476893	0.82[YRI][hapmap];1.00[AMR][1000 genomes]
rs10477375	1.00[AMR][1000 genomes]
rs10477377	0.82[YRI][hapmap];1.00[AMR][1000 genomes]
rs11953609	1.00[AMR][1000 genomes]
rs12332247	1.00[AMR][1000 genomes]
rs13328218	1.00[AMR][1000 genomes]
rs13356990	1.00[AMR][1000 genomes]
rs28477447	1.00[AMR][1000 genomes]
rs28488637	1.00[AMR][1000 genomes]
rs28503435	1.00[AMR][1000 genomes]
rs57679720	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830516	chr5:147801104-147966093	Weak transcription Enhancers Strong transcription Genic enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:147849400-147855600	Weak transcription	Fetal Brain Male	brain
2	chr5:147849600-147856000	Weak transcription	Brain Anterior Caudate	brain
3	chr5:147854000-147861200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
4	chr5:147855000-147855600	Enhancers	Fetal Heart	heart

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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