Variant report

Variant	rs10057961
Chromosome Location	chr5:147769045-147769046
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr5:147768995..147770771-chr5:147775517..147777372,2	K562	blood:
2	chr5:147765249..147769728-chr5:147791100..147796136,4	K562	blood:
3	chr5:147766631..147770580-chr5:147772550..147777901,5	MCF-7	breast:
4	chr5:147768228..147772118-chr5:147794636..147797754,3	K562	blood:
5	chr5:147761605..147765923-chr5:147767275..147775967,11	MCF-7	breast:
6	chr5:147768135..147770524-chr5:147775300..147778103,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000247199	Chromatin interaction
ENSG00000145868	Chromatin interaction

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs10037368	1.00[AMR][1000 genomes]
rs10040393	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10040505	1.00[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10042851	1.00[AMR][1000 genomes]
rs10044087	1.00[AMR][1000 genomes]
rs10045091	1.00[AMR][1000 genomes]
rs10045756	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10052377	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10056478	1.00[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10065391	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10066963	1.00[AMR][1000 genomes]
rs10068025	1.00[AMR][1000 genomes]
rs10068442	1.00[AMR][1000 genomes]
rs10069937	1.00[AMR][1000 genomes]
rs10070008	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10070268	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10071193	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10072138	1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs10076153	1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs10077891	1.00[YRI][hapmap];0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10079807	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10447230	1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs10476893	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10477375	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10477377	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11953609	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12332247	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13328218	1.00[AMR][1000 genomes]
rs13356990	1.00[AMR][1000 genomes]
rs28477447	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28488637	1.00[AMR][1000 genomes]
rs28503435	1.00[AMR][1000 genomes]
rs57679720	1.00[AMR][1000 genomes]

No data

Chromatin state (count:122 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:147764400-147773000	Weak transcription	H9 Cell Line	embryonic stem cell
2	chr5:147764400-147777200	Weak transcription	Fetal Muscle Trunk	muscle
3	chr5:147764400-147789800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr5:147764400-147795400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr5:147764400-147796600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
6	chr5:147764400-147806800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
7	chr5:147764600-147770600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
8	chr5:147764600-147772200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
9	chr5:147764600-147772400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
10	chr5:147764600-147773800	Weak transcription	HSMM	muscle
11	chr5:147764600-147774400	Weak transcription	HMEC	breast
12	chr5:147764800-147771800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
13	chr5:147764800-147772600	Weak transcription	Fetal Brain Female	brain
14	chr5:147764800-147777400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
15	chr5:147765000-147770600	Weak transcription	HUES6 Cell Line	embryonic stem cell
16	chr5:147765000-147784600	Weak transcription	Fetal Stomach	stomach
17	chr5:147765200-147770400	Weak transcription	Brain Hippocampus Middle	brain
18	chr5:147765200-147771800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
19	chr5:147765200-147771800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
20	chr5:147765200-147774200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
21	chr5:147765200-147774400	Weak transcription	Fetal Lung	lung
22	chr5:147765200-147777600	Weak transcription	Cortex derived primary cultured neurospheres	brain
23	chr5:147765200-147778400	Weak transcription	Fetal Kidney	kidney
24	chr5:147765200-147778600	Weak transcription	Stomach Smooth Muscle	stomach
25	chr5:147765200-147796200	Weak transcription	Esophagus	oesophagus
26	chr5:147765600-147778600	Weak transcription	Rectal Smooth Muscle	rectum
27	chr5:147765600-147784200	Weak transcription	Colonic Mucosa	Colon
28	chr5:147765800-147769200	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
29	chr5:147765800-147769200	Strong transcription	Fetal Muscle Leg	muscle
30	chr5:147765800-147769600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
31	chr5:147765800-147769800	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
32	chr5:147765800-147770000	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
33	chr5:147765800-147770400	Genic enhancers	Primary T helper cells PMA-I stimulated	--
34	chr5:147765800-147770400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
35	chr5:147765800-147770400	Weak transcription	Duodenum Mucosa	Duodenum
36	chr5:147765800-147770600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
37	chr5:147765800-147772000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
38	chr5:147765800-147772000	Weak transcription	Fetal Brain Male	brain
39	chr5:147765800-147772200	Weak transcription	Brain Substantia Nigra	brain
40	chr5:147765800-147772400	Weak transcription	Pancreatic Islets	Pancreatic Islet
41	chr5:147765800-147773800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
42	chr5:147765800-147774400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
43	chr5:147765800-147778600	Weak transcription	Brain Cingulate Gyrus	brain
44	chr5:147765800-147789600	Weak transcription	Lung	lung
45	chr5:147766000-147770000	Weak transcription	Rectal Mucosa Donor 31	rectum
46	chr5:147766000-147770200	Weak transcription	Rectal Mucosa Donor 29	rectum
47	chr5:147766000-147770600	Weak transcription	Right Ventricle	heart
48	chr5:147766000-147772200	Weak transcription	Psoas Muscle	Psoas
49	chr5:147766000-147772600	Weak transcription	Brain Inferior Temporal Lobe	brain
50	chr5:147766000-147772800	Weak transcription	Brain Angular Gyrus	brain

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