Variant report

Variant	rs10089274
Chromosome Location	chr8:79106991-79106992
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10096125	0.97[EUR][1000 genomes]
rs10504664	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs12335288	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs16905546	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs16905558	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs16939627	0.87[EUR][1000 genomes]
rs16939630	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs28441036	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs28818281	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs34883856	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs55915248	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs56107472	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs62518485	0.83[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs62518491	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs62518502	0.90[EUR][1000 genomes]
rs72674598	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs9298309	0.97[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831364	chr8:79034769-79223319	ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv982138	chr8:79106680-79116734	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:79106600-79109200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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