Variant report

Variant	rs9298309
Chromosome Location	chr8:79145203-79145204
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10089274	0.97[EUR][1000 genomes]
rs10096125	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10504664	0.98[EUR][1000 genomes]
rs12335288	1.00[EUR][1000 genomes]
rs16905546	0.98[EUR][1000 genomes]
rs16905558	1.00[EUR][1000 genomes]
rs16939626	0.81[EUR][1000 genomes]
rs16939627	0.90[EUR][1000 genomes]
rs16939630	0.93[EUR][1000 genomes]
rs17485419	0.83[AFR][1000 genomes]
rs28441036	1.00[EUR][1000 genomes]
rs28818281	0.96[EUR][1000 genomes]
rs34883856	0.98[EUR][1000 genomes]
rs55915248	1.00[EUR][1000 genomes]
rs56107472	1.00[EUR][1000 genomes]
rs62518485	1.00[EUR][1000 genomes]
rs62518491	1.00[EUR][1000 genomes]
rs62518502	0.93[EUR][1000 genomes]
rs72674598	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831364	chr8:79034769-79223319	ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv891055	chr8:79110386-79256864	Weak transcription Enhancers Bivalent/Poised TSS Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv831365	chr8:79128833-79281645	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:79141200-79145400	Enhancers	Colon Smooth Muscle	Colon
2	chr8:79143200-79145400	Enhancers	HUES48 Cell Line	embryonic stem cell
3	chr8:79143400-79145400	Enhancers	HUES6 Cell Line	embryonic stem cell
4	chr8:79143400-79145400	Enhancers	iPS-15b Cell Line	embryonic stem cell
5	chr8:79144200-79145400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
6	chr8:79144400-79145600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
7	chr8:79144600-79145400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
8	chr8:79145000-79145600	Enhancers	ES-I3 Cell Line	embryonic stem cell
9	chr8:79145000-79145600	Enhancers	Osteobl	bone
10	chr8:79145000-79147200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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