Variant report

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs10096125	0.81[EUR][1000 genomes]
rs10957883	0.87[EUR][1000 genomes]
rs12335288	0.81[EUR][1000 genomes]
rs16905558	0.81[EUR][1000 genomes]
rs16939604	0.84[EUR][1000 genomes]
rs16939605	0.84[EUR][1000 genomes]
rs16939611	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs16939613	0.85[EUR][1000 genomes]
rs16939627	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs16939630	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];0.84[TSI][hapmap];0.94[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs28441036	0.81[EUR][1000 genomes]
rs28818281	0.94[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs55915248	0.81[EUR][1000 genomes]
rs56080040	0.82[EUR][1000 genomes]
rs56107472	0.81[EUR][1000 genomes]
rs62510273	0.83[EUR][1000 genomes]
rs62510274	0.83[EUR][1000 genomes]
rs62510299	0.89[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs62518485	0.81[EUR][1000 genomes]
rs62518491	0.81[EUR][1000 genomes]
rs6995312	0.82[EUR][1000 genomes]
rs72674515	0.82[EUR][1000 genomes]
rs72674598	0.81[EUR][1000 genomes]
rs9298309	0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831364	chr8:79034769-79223319	ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

mRNA abundance (count:3)

SNP	Gene	Cis/trans	Tissue	Source
rs16939626	STMN2	cis	cerebellum	SCAN
rs16939626	FAM164A	cis	cerebellum	SCAN
rs16939626	ZBTB10	cis	cerebellum	SCAN

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:79052600-79063600	Weak transcription	HUES48 Cell Line	embryonic stem cell

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