Variant report

Variant	rs62510273
Chromosome Location	chr8:79026189-79026190
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs10957883	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs16939604	1.00[AFR][1000 genomes];0.95[EUR][1000 genomes]
rs16939605	1.00[AFR][1000 genomes];0.95[EUR][1000 genomes]
rs16939611	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs16939613	0.85[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs16939626	0.83[EUR][1000 genomes]
rs16939630	0.84[AMR][1000 genomes]
rs56080040	0.91[AFR][1000 genomes];0.99[EUR][1000 genomes]
rs62510274	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6995312	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs6997505	0.81[AFR][1000 genomes];0.90[EUR][1000 genomes]
rs72674515	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv526123	chr8:79008608-79046492	Enhancers Flanking Active TSS Active TSS Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a
2	nsv525612	chr8:79008608-79046695	Enhancers Flanking Active TSS Weak transcription Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:79025800-79026800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
2	chr8:79026000-79026600	Weak transcription	NHEK	skin
3	chr8:79026000-79027000	Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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