Variant report

Variant	rs6995312
Chromosome Location	chr8:79046695-79046696
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs10957883	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs16939604	0.89[EUR][1000 genomes]
rs16939605	0.89[EUR][1000 genomes]
rs16939611	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs16939613	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs16939626	0.82[EUR][1000 genomes]
rs16939630	0.89[CEU][hapmap];1.00[GIH][hapmap];0.84[TSI][hapmap];0.80[AMR][1000 genomes]
rs56080040	0.94[EUR][1000 genomes]
rs62510273	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs62510274	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs6997505	0.85[EUR][1000 genomes]
rs72674515	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv525612	chr8:79008608-79046695	Enhancers Flanking Active TSS Weak transcription Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a
2	nsv831364	chr8:79034769-79223319	ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs6995312	ZBTB10	cis	cerebellum	SCAN
rs6995312	FAM164A	cis	cerebellum	SCAN

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:79044800-79047200	Enhancers	Rectal Smooth Muscle	rectum
2	chr8:79045000-79046800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
3	chr8:79045400-79047200	Enhancers	Colon Smooth Muscle	Colon
4	chr8:79045600-79047000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
5	chr8:79046200-79051800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
6	chr8:79046400-79047000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr8:79046400-79047000	Enhancers	Fetal Stomach	stomach

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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