Variant report

Variant	rs10957883
Chromosome Location	chr8:79050267-79050268
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs16939604	0.90[EUR][1000 genomes]
rs16939605	0.90[EUR][1000 genomes]
rs16939611	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs16939613	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs16939626	0.87[EUR][1000 genomes]
rs16939630	0.89[CEU][hapmap];0.80[AMR][1000 genomes]
rs56080040	0.89[EUR][1000 genomes]
rs62510273	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs62510274	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs6995312	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs6997505	0.86[EUR][1000 genomes]
rs72674515	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831364	chr8:79034769-79223319	ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:79046200-79051800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
2	chr8:79046800-79051000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
3	chr8:79050200-79051000	Enhancers	Fetal Lung	lung

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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