Variant report

Variant	rs56080040
Chromosome Location	chr8:79009063-79009064
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs10957883	0.89[EUR][1000 genomes]
rs16939604	0.91[AFR][1000 genomes];0.90[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs16939605	0.91[AFR][1000 genomes];0.85[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs16939611	0.94[EUR][1000 genomes]
rs16939613	0.97[EUR][1000 genomes]
rs16939626	0.82[EUR][1000 genomes]
rs62510273	0.91[AFR][1000 genomes];0.99[EUR][1000 genomes]
rs62510274	0.91[AFR][1000 genomes];0.99[EUR][1000 genomes]
rs6995312	0.94[EUR][1000 genomes]
rs6997505	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs72674515	0.98[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv526123	chr8:79008608-79046492	Enhancers Flanking Active TSS Active TSS Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a
2	nsv525612	chr8:79008608-79046695	Enhancers Flanking Active TSS Weak transcription Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:78997000-79010000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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