Variant report

Variant	rs16939613
Chromosome Location	chr8:79036777-79036778
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs10957883	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs16939604	0.93[EUR][1000 genomes]
rs16939605	0.93[EUR][1000 genomes]
rs16939611	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs16939626	0.85[EUR][1000 genomes]
rs16939630	0.89[CEU][hapmap];1.00[GIH][hapmap];0.84[TSI][hapmap];0.80[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs56080040	0.97[EUR][1000 genomes]
rs62510273	0.85[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs62510274	0.85[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs6995312	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs6997505	0.88[EUR][1000 genomes]
rs72674515	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv526123	chr8:79008608-79046492	Enhancers Flanking Active TSS Active TSS Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a
2	nsv525612	chr8:79008608-79046695	Enhancers Flanking Active TSS Weak transcription Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a
3	nsv831364	chr8:79034769-79223319	ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs16939613	ZBTB10	cis	cerebellum	SCAN
rs16939613	FAM164A	cis	cerebellum	SCAN

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:79031000-79037000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
2	chr8:79036400-79037200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr8:79036600-79037000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
4	chr8:79036600-79039000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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