Variant report

Variant	rs72674515
Chromosome Location	chr8:79030436-79030437
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs10957883	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs16939604	0.94[EUR][1000 genomes]
rs16939605	0.94[EUR][1000 genomes]
rs16939611	0.95[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs16939613	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs16939626	0.82[EUR][1000 genomes]
rs16939630	0.84[AMR][1000 genomes]
rs56080040	0.98[EUR][1000 genomes]
rs62510273	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs62510274	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs6995312	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs6997505	0.89[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv526123	chr8:79008608-79046492	Enhancers Flanking Active TSS Active TSS Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a
2	nsv525612	chr8:79008608-79046695	Enhancers Flanking Active TSS Weak transcription Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:79027800-79031000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
2	chr8:79027800-79032400	Weak transcription	H9 Cell Line	embryonic stem cell
3	chr8:79027800-79032800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
4	chr8:79028000-79030600	Enhancers	Primary hematopoietic stem cells	blood
5	chr8:79028000-79030600	Enhancers	Primary hematopoietic stem cells short term culture	blood
6	chr8:79028200-79031000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
7	chr8:79029200-79032600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
8	chr8:79030000-79030800	Enhancers	ES-I3 Cell Line	embryonic stem cell
9	chr8:79030000-79030800	Enhancers	H1 Cell Line	embryonic stem cell
10	chr8:79030000-79031600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
11	chr8:79030400-79031000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
12	chr8:79030400-79032600	Weak transcription	HUES64 Cell Line	embryonic stem cell

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links