Variant report

Variant	rs10096125
Chromosome Location	chr8:79135054-79135055
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10089274	0.97[EUR][1000 genomes]
rs10504664	0.98[EUR][1000 genomes]
rs12335288	1.00[EUR][1000 genomes]
rs16905546	0.98[EUR][1000 genomes]
rs16905558	1.00[EUR][1000 genomes]
rs16939626	0.81[EUR][1000 genomes]
rs16939627	0.90[EUR][1000 genomes]
rs16939630	0.89[CEU][hapmap];0.93[EUR][1000 genomes]
rs17485419	0.81[AFR][1000 genomes]
rs28441036	1.00[EUR][1000 genomes]
rs28818281	0.96[EUR][1000 genomes]
rs34883856	0.98[EUR][1000 genomes]
rs55915248	1.00[EUR][1000 genomes]
rs56107472	1.00[EUR][1000 genomes]
rs62518485	1.00[EUR][1000 genomes]
rs62518491	1.00[EUR][1000 genomes]
rs62518502	0.93[EUR][1000 genomes]
rs72674598	1.00[EUR][1000 genomes]
rs9298309	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831364	chr8:79034769-79223319	ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv891055	chr8:79110386-79256864	Weak transcription Enhancers Bivalent/Poised TSS Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv831365	chr8:79128833-79281645	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:79129200-79143800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr8:79133400-79135600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
3	chr8:79134200-79135200	Weak transcription	Primary monocytes fromperipheralblood	blood
4	chr8:79134400-79135600	Weak transcription	Monocytes-CD14+_RO01746	blood
5	chr8:79134600-79135600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
6	chr8:79134600-79135600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
7	chr8:79134600-79136000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr8:79134800-79135600	Weak transcription	Aorta	Aorta
9	chr8:79134800-79136000	Enhancers	Osteobl	bone
10	chr8:79135000-79135200	Flanking Active TSS	Muscle Satellite Cultured Cells	--

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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