Variant report

Variant	rs10504664
Chromosome Location	chr8:79110386-79110387
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 3 )

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10089274	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs10096125	0.98[EUR][1000 genomes]
rs12335288	0.83[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs16905546	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16905558	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs16939627	0.88[EUR][1000 genomes]
rs16939630	0.90[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];0.82[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs28441036	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs28818281	0.93[EUR][1000 genomes]
rs34883856	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs55915248	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs56107472	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs62518485	0.86[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs62518491	0.83[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs62518502	0.91[EUR][1000 genomes]
rs72674598	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs9298309	0.98[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831364	chr8:79034769-79223319	ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv982138	chr8:79106680-79116734	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv891055	chr8:79110386-79256864	Weak transcription Enhancers Bivalent/Poised TSS Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

mRNA abundance (count:3)

SNP	Gene	Cis/trans	Tissue	Source
rs10504664	ZBTB10	cis	cerebellum	SCAN
rs10504664	FAM164A	cis	cerebellum	SCAN
rs10504664	STMN2	cis	cerebellum	SCAN

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:79108200-79113000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
2	chr8:79109200-79110400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
3	chr8:79109400-79110800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
4	chr8:79109400-79111000	Enhancers	HSMM	muscle
5	chr8:79109400-79111400	Enhancers	Osteobl	bone
6	chr8:79109400-79112800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr8:79109400-79113000	Enhancers	Muscle Satellite Cultured Cells	--
8	chr8:79109400-79113200	Enhancers	Primary monocytes fromperipheralblood	blood
9	chr8:79109400-79113200	Enhancers	Monocytes-CD14+_RO01746	blood
10	chr8:79110000-79111200	Weak transcription	Hela-S3	cervix
11	chr8:79110000-79112000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
12	chr8:79110000-79112000	Weak transcription	HMEC	breast

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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