Variant report

Variant	rs28818281
Chromosome Location	chr8:79070070-79070071
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10089274	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs10096125	0.96[EUR][1000 genomes]
rs10504664	0.93[EUR][1000 genomes]
rs12335288	0.96[EUR][1000 genomes]
rs16905546	0.93[EUR][1000 genomes]
rs16905558	0.96[EUR][1000 genomes]
rs16939626	0.94[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs16939627	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs16939630	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs28441036	0.96[EUR][1000 genomes]
rs34883856	0.93[EUR][1000 genomes]
rs55915248	0.96[EUR][1000 genomes]
rs56107472	0.96[EUR][1000 genomes]
rs62510299	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs62518485	0.96[EUR][1000 genomes]
rs62518491	0.96[EUR][1000 genomes]
rs62518502	0.89[EUR][1000 genomes]
rs72674598	0.96[EUR][1000 genomes]
rs9298309	0.96[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831364	chr8:79034769-79223319	ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:79067200-79070400	Weak transcription	HUES48 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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