Variant report

Variant	rs16905546
Chromosome Location	chr8:79127410-79127411
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10089274	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs10096125	0.98[EUR][1000 genomes]
rs10504664	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12335288	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs16905558	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs16939627	0.88[EUR][1000 genomes]
rs16939630	0.90[CEU][hapmap];0.91[EUR][1000 genomes]
rs28441036	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs28818281	0.93[EUR][1000 genomes]
rs34883856	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs55915248	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs56107472	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs62518485	0.83[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs62518491	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs62518502	0.91[EUR][1000 genomes]
rs72674598	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs9298309	0.98[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831364	chr8:79034769-79223319	ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv891055	chr8:79110386-79256864	Weak transcription Enhancers Bivalent/Poised TSS Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:79119600-79128400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
2	chr8:79124800-79127800	Weak transcription	Muscle Satellite Cultured Cells	--
3	chr8:79125400-79128000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
4	chr8:79126400-79128200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr8:79126600-79127600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
6	chr8:79127400-79128200	Enhancers	ES-I3 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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