Variant report

Variant	rs16905558
Chromosome Location	chr8:79143085-79143086
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10089274	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs10096125	1.00[EUR][1000 genomes]
rs10504664	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs12335288	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16905546	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs16939626	0.81[EUR][1000 genomes]
rs16939627	0.90[EUR][1000 genomes]
rs16939630	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs28441036	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28818281	0.96[EUR][1000 genomes]
rs34883856	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs55915248	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56107472	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62518485	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62518491	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62518502	0.93[EUR][1000 genomes]
rs72674598	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9298309	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831364	chr8:79034769-79223319	ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv891055	chr8:79110386-79256864	Weak transcription Enhancers Bivalent/Poised TSS Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv831365	chr8:79128833-79281645	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:79129200-79143800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr8:79139000-79143400	Weak transcription	Fetal Muscle Leg	muscle
3	chr8:79141000-79143600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
4	chr8:79141200-79145400	Enhancers	Colon Smooth Muscle	Colon
5	chr8:79141400-79144200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
6	chr8:79141600-79143800	Enhancers	Osteobl	bone
7	chr8:79141600-79145000	Enhancers	Fetal Lung	lung
8	chr8:79141800-79144600	Enhancers	Muscle Satellite Cultured Cells	--
9	chr8:79142000-79144400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
10	chr8:79142200-79143200	Weak transcription	HUES64 Cell Line	embryonic stem cell
11	chr8:79142200-79143400	Weak transcription	Adipose Nuclei	Adipose
12	chr8:79142200-79144600	Enhancers	Cortex derived primary cultured neurospheres	brain
13	chr8:79142400-79143400	Weak transcription	Brain Germinal Matrix	brain
14	chr8:79142600-79143200	Weak transcription	HUES48 Cell Line	embryonic stem cell
15	chr8:79142600-79143200	Weak transcription	Fetal Brain Male	brain
16	chr8:79142600-79143600	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
17	chr8:79142600-79144600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
18	chr8:79142600-79145000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
19	chr8:79142800-79143200	Weak transcription	Fetal Stomach	stomach
20	chr8:79142800-79143400	Weak transcription	HUES6 Cell Line	embryonic stem cell
21	chr8:79143000-79143200	Enhancers	Fetal Brain Female	brain
22	chr8:79143000-79143400	Weak transcription	Rectal Smooth Muscle	rectum

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