Variant report

Variant	rs10093150
Chromosome Location	chr8:130135055-130135056
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr8:130133021..130135254-chr8:130137855..130140230,2	K562	blood:
2	chr8:130133687..130135596-chr8:130141322..130143040,2	K562	blood:
3	chr8:130128975..130131207-chr8:130134226..130136520,2	K562	blood:
4	chr8:130133386..130135625-chr8:130146604..130148790,2	K562	blood:
5	chr8:130134376..130135928-chr8:130138822..130140597,2	MCF-7	breast:

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs10107597	0.80[AFR][1000 genomes];0.91[AMR][1000 genomes]
rs10956463	0.85[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10956464	1.00[ASN][1000 genomes]
rs10956465	0.91[ASN][1000 genomes]
rs12546355	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12547572	0.90[AMR][1000 genomes]
rs13270479	0.86[AFR][1000 genomes];0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4289775	0.94[ASN][1000 genomes]
rs4310170	0.90[ASN][1000 genomes]
rs4448233	0.89[ASN][1000 genomes]
rs4524751	0.80[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4524752	0.80[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6470696	0.83[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6470697	0.85[AMR][1000 genomes]
rs6470698	0.90[ASN][1000 genomes]
rs6981888	0.90[ASN][1000 genomes]
rs6982195	0.90[ASN][1000 genomes]
rs6987260	0.83[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6996102	0.88[AMR][1000 genomes]
rs6996505	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7001827	0.90[ASN][1000 genomes]
rs7007293	0.83[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7011330	0.83[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs72609876	0.92[ASN][1000 genomes]
rs7815753	0.87[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7821655	0.92[ASN][1000 genomes]
rs7824972	0.93[AFR][1000 genomes];0.89[AMR][1000 genomes];0.84[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7825362	0.81[AMR][1000 genomes]
rs7831436	0.97[AFR][1000 genomes];0.91[AMR][1000 genomes];0.87[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7839556	0.90[ASN][1000 genomes]
rs7846150	0.90[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv891443	chr8:130016499-130220746	Weak transcription Flanking Active TSS Enhancers Genic enhancers Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats Active TSS	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:130126400-130160600	Weak transcription	Fetal Thymus	thymus
2	chr8:130128600-130135200	Enhancers	Cortex derived primary cultured neurospheres	brain
3	chr8:130131200-130136000	Genic enhancers	Dnd41	blood
4	chr8:130133800-130136400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
5	chr8:130134000-130135800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
6	chr8:130134600-130135800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
7	chr8:130134800-130135200	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
8	chr8:130134800-130135200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
9	chr8:130134800-130135200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
10	chr8:130134800-130135800	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin

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